Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W75_RS05565 Genome accession   NZ_CP027462
Coordinates   1050907..1051644 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 07-4299     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1045907..1056644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W75_RS05530 yfiL 1046065..1046430 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6W75_RS05535 aroF 1046640..1047710 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6W75_RS05540 tyrA 1047721..1048842 (+) 1122 WP_000225201.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W75_RS05545 pheA 1048885..1050045 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W75_RS05550 pheL 1050144..1050191 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W75_RS05555 raiA 1050295..1050636 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W75_RS05565 comL 1050907..1051644 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6W75_RS05570 rluD 1051779..1052759 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W75_RS05575 yfiH 1052756..1053487 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  C6W75_RS05580 clpC 1053617..1056190 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=234717 C6W75_RS05565 WP_000197686.1 1050907..1051644(-) (comL) [Escherichia coli isolate 07-4299]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234717 C6W75_RS05565 WP_000197686.1 1050907..1051644(-) (comL) [Escherichia coli isolate 07-4299]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376