Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | CD007_RS12115 | Genome accession | NZ_CP021903 |
| Coordinates | 2377380..2377715 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain ge28 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2372380..2382715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD007_RS12095 (CD007_12095) | gcvT | 2372973..2374061 (-) | 1089 | WP_041850013.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CD007_RS12100 (CD007_12100) | hepAA | 2374502..2376175 (+) | 1674 | WP_041850014.1 | SNF2-related protein | - |
| CD007_RS12105 (CD007_12105) | yqhG | 2376196..2376990 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| CD007_RS12110 (CD007_12110) | sinI | 2377173..2377346 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| CD007_RS12115 (CD007_12115) | sinR | 2377380..2377715 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| CD007_RS12120 (CD007_12120) | tasA | 2377808..2378593 (-) | 786 | WP_015251717.1 | biofilm matrix protein TasA | - |
| CD007_RS12125 (CD007_12125) | sipW | 2378657..2379229 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| CD007_RS12130 (CD007_12130) | tapA | 2379213..2379974 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CD007_RS12135 (CD007_12135) | yqzG | 2380246..2380572 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| CD007_RS12140 (CD007_12140) | spoIITA | 2380614..2380793 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| CD007_RS12145 (CD007_12145) | comGG | 2380864..2381238 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| CD007_RS12150 (CD007_12150) | comGF | 2381239..2381622 (-) | 384 | WP_041850015.1 | ComG operon protein ComGF | Machinery gene |
| CD007_RS12155 (CD007_12155) | comGE | 2381648..2381995 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| CD007_RS12160 (CD007_12160) | comGD | 2381979..2382410 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| CD007_RS12165 (CD007_12165) | comGC | 2382400..2382696 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=234615 CD007_RS12115 WP_003226345.1 2377380..2377715(+) (sinR) [Bacillus subtilis strain ge28]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=234615 CD007_RS12115 WP_003226345.1 2377380..2377715(+) (sinR) [Bacillus subtilis strain ge28]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |