Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S100333_RS19785 Genome accession   NZ_CP021892
Coordinates   3715921..3716040 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3710921..3721040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS19760 (S100333_04029) albG 3711088..3711789 (+) 702 WP_088272551.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  S100333_RS19765 (S100333_04030) ywhL 3711795..3713162 (-) 1368 WP_088272552.1 YncE family protein -
  S100333_RS19770 ywhK 3713211..3714562 (-) 1352 Protein_3851 YncE family protein -
  S100333_RS23120 - 3714559..3714789 (-) 231 Protein_3852 hypothetical protein -
  S100333_RS19780 (S100333_04033) rapF 3714792..3715937 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  S100333_RS19785 (S100333_04034) phrF 3715921..3716040 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  S100333_RS19790 (S100333_04035) - 3716138..3716565 (+) 428 Protein_3855 YbaK/EbsC family protein -
  S100333_RS19795 speB 3716630..3717501 (-) 872 Protein_3856 agmatinase -
  S100333_RS19800 (S100333_04037) speE 3717562..3718392 (-) 831 WP_003227543.1 spermidine synthase -
  S100333_RS19805 (S100333_04038) pbpG 3718595..3720670 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=234569 S100333_RS19785 WP_009968329.1 3715921..3716040(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=234569 S100333_RS19785 WP_009968329.1 3715921..3716040(+) (phrF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment