Detailed information NTG0234568

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: S100333_RS19780
• Genome accession: NZ_CP021892
• Coordinates: 3714792..3715937 (+)
• Length: 381 a.a.
• NCBI ID: WP_069837832.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain SRCM100333
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3709792..3720937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S100333_RS19755 (S100333_04028)	albF	3709811..3711091 (+)	1281	WP_088272550.1	pitrilysin family protein	-
S100333_RS19760 (S100333_04029)	albG	3711088..3711789 (+)	702	WP_088272551.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
S100333_RS19765 (S100333_04030)	ywhL	3711795..3713162 (-)	1368	WP_088272552.1	YncE family protein	-
S100333_RS19770	ywhK	3713211..3714562 (-)	1352	Protein_3851	YncE family protein	-
S100333_RS23120	-	3714559..3714789 (-)	231	Protein_3852	hypothetical protein	-
S100333_RS19780 (S100333_04033)	rapF	3714792..3715937 (+)	1146	WP_069837832.1	response regulator aspartate phosphatase RapF	Regulator
S100333_RS19785 (S100333_04034)	phrF	3715921..3716040 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
S100333_RS19790 (S100333_04035)	-	3716138..3716565 (+)	428	Protein_3855	YbaK/EbsC family protein	-
S100333_RS19795	speB	3716630..3717501 (-)	872	Protein_3856	agmatinase	-
S100333_RS19800 (S100333_04037)	speE	3717562..3718392 (-)	831	WP_003227543.1	spermidine synthase	-
S100333_RS19805 (S100333_04038)	pbpG	3718595..3720670 (+)	2076	WP_015384942.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45624.07 Da
• Isoelectric Point: 5.0624

>NTDB_id=234568 S100333_RS19780 WP_069837832.1 3714792..3715937(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFTIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=234568 S100333_RS19780 WP_069837832.1 3714792..3715937(+) (rapF) [Bacillus subtilis subsp. subtilis strain SRCM100333]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACAGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCACTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57