Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S100333_RS12940 Genome accession   NZ_CP021892
Coordinates   2416855..2417190 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2411855..2422190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS12920 (S100333_02643) gcvT 2412447..2413535 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  S100333_RS12925 (S100333_02644) hepAA 2413977..2415650 (+) 1674 WP_014480248.1 SNF2-related protein -
  S100333_RS12930 (S100333_02645) yqhG 2415671..2416465 (+) 795 WP_014480249.1 YqhG family protein -
  S100333_RS12935 (S100333_02646) sinI 2416648..2416821 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  S100333_RS12940 (S100333_02647) sinR 2416855..2417190 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  S100333_RS12945 (S100333_02648) tasA 2417283..2418068 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  S100333_RS12950 (S100333_02649) sipW 2418132..2418704 (-) 573 WP_003230181.1 signal peptidase I SipW -
  S100333_RS12955 (S100333_02650) tapA 2418688..2419449 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  S100333_RS12960 (S100333_02651) yqzG 2419721..2420047 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  S100333_RS12965 (S100333_02652) spoIITA 2420089..2420268 (-) 180 WP_014480252.1 YqzE family protein -
  S100333_RS12970 (S100333_02653) comGG 2420339..2420713 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  S100333_RS12975 (S100333_02654) comGF 2420714..2421097 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  S100333_RS12980 (S100333_02655) comGE 2421123..2421470 (-) 348 WP_088272394.1 ComG operon protein 5 Machinery gene
  S100333_RS12985 (S100333_02656) comGD 2421454..2421885 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  S100333_RS12990 (S100333_02657) comGC 2421875..2422171 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=234534 S100333_RS12940 WP_003226345.1 2416855..2417190(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=234534 S100333_RS12940 WP_003226345.1 2416855..2417190(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM100333]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment