Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W76_RS00450 Genome accession   NZ_CP027459
Coordinates   80970..81707 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 90-3040     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 75970..86707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W76_RS00415 yfiL 76127..76492 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6W76_RS00420 aroF 76702..77772 (+) 1071 WP_032207549.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6W76_RS00425 tyrA 77783..78904 (+) 1122 WP_047087231.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W76_RS00430 pheA 78947..80107 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W76_RS00435 pheL 80207..80254 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W76_RS00440 raiA 80358..80699 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W76_RS00450 comL 80970..81707 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6W76_RS00455 rluD 81842..82822 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W76_RS00460 yfiH 82819..83550 (+) 732 WP_000040142.1 purine nucleoside phosphorylase YfiH -
  C6W76_RS00465 clpC 83680..86253 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=234534 C6W76_RS00450 WP_000197686.1 80970..81707(-) (comL) [Escherichia coli strain 90-3040]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234534 C6W76_RS00450 WP_000197686.1 80970..81707(-) (comL) [Escherichia coli strain 90-3040]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment