Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6W76_RS00140 Genome accession   NZ_CP027459
Coordinates   25260..25775 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 90-3040     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 20260..30775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W76_RS00100 csrA 20987..21172 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6W76_RS00125 yqaB 22489..23055 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6W76_RS00130 yqaA 23052..23480 (+) 429 WP_001287457.1 YqaA family protein -
  C6W76_RS00135 gshA 23553..25109 (+) 1557 WP_047087234.1 glutamate--cysteine ligase -
  C6W76_RS00140 luxS 25260..25775 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6W76_RS00145 emrB 25839..27377 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6W76_RS00150 emrA 27394..28566 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6W76_RS00155 emrR 28693..29223 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6W76_RS00160 ygaH 29314..29649 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6W76_RS00165 ygaZ 29639..30376 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=234533 C6W76_RS00140 WP_001130211.1 25260..25775(+) (luxS) [Escherichia coli strain 90-3040]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=234533 C6W76_RS00140 WP_001130211.1 25260..25775(+) (luxS) [Escherichia coli strain 90-3040]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGATGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment