Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CDW54_RS05705 Genome accession   NZ_CP021885
Coordinates   1125504..1126016 (+) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain WEFA23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1120504..1131016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDW54_RS05695 (CDW54_05705) gyrA 1122448..1124919 (+) 2472 WP_002328012.1 DNA gyrase subunit A -
  CDW54_RS05700 (CDW54_05710) rpsF 1125155..1125454 (+) 300 WP_002288366.1 30S ribosomal protein S6 -
  CDW54_RS05705 (CDW54_05715) ssb 1125504..1126016 (+) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  CDW54_RS05710 (CDW54_05720) rpsR 1126042..1126278 (+) 237 WP_002288370.1 30S ribosomal protein S18 -
  CDW54_RS05715 (CDW54_05725) - 1126421..1128394 (+) 1974 WP_002288371.1 DHH family phosphoesterase -
  CDW54_RS05720 (CDW54_05730) rplI 1128400..1128852 (+) 453 WP_002288372.1 50S ribosomal protein L9 -
  CDW54_RS05725 (CDW54_05735) dnaB 1129126..1130493 (+) 1368 WP_002288373.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=234393 CDW54_RS05705 WP_002288368.1 1125504..1126016(+) (ssb) [Enterococcus faecium strain WEFA23]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=234393 CDW54_RS05705 WP_002288368.1 1125504..1126016(+) (ssb) [Enterococcus faecium strain WEFA23]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388

Multiple sequence alignment