Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6W71_RS16890 Genome accession   NZ_CP027452
Coordinates   3274955..3275692 (-) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3338     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269955..3280692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W71_RS16860 tyrA 3270328..3271449 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6W71_RS16865 pheA 3271492..3272652 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6W71_RS16870 pheL 3272751..3272798 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6W71_RS16875 raiA 3272902..3273243 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6W71_RS16885 insG 3273504..3274851 (-) 1348 Protein_3103 IS4-like element IS4 family transposase -
  C6W71_RS16890 comL 3274955..3275692 (-) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  C6W71_RS16895 rluD 3275827..3276807 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6W71_RS16900 yfiH 3276804..3277535 (+) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  C6W71_RS16905 clpC 3277665..3280238 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=234355 C6W71_RS16890 WP_000197684.1 3274955..3275692(-) (comL) [Escherichia coli strain 2014C-3338]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=234355 C6W71_RS16890 WP_000197684.1 3274955..3275692(-) (comL) [Escherichia coli strain 2014C-3338]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384