Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   PD_RS08890 Genome accession   NC_004556
Coordinates   1966569..1968479 (-) Length   636 a.a.
NCBI ID   WP_011098213.1    Uniprot ID   B2I8B2
Organism   Xylella fastidiosa Temecula1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961569..1973479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS08880 (PD1689) - 1962765..1964384 (-) 1620 WP_225621638.1 phosphoethanolamine transferase -
  PD_RS08885 (PD1690) - 1964420..1965178 (-) 759 WP_004089904.1 phosphatase PAP2 family protein -
  PD_RS08890 (PD1691) comQ/pilQ 1966569..1968479 (-) 1911 WP_011098213.1 type IV pilus secretin PilQ Machinery gene
  PD_RS08895 (PD1692) - 1968479..1969009 (-) 531 WP_011098214.1 pilus assembly protein PilP -
  PD_RS08900 (PD1693) - 1969006..1969674 (-) 669 WP_004089909.1 type 4a pilus biogenesis protein PilO -
  PD_RS08905 (PD1694) - 1969776..1970336 (-) 561 Protein_1756 PilN domain-containing protein -
  PD_RS08910 (PD1695) pilM 1970336..1971394 (-) 1059 WP_004089911.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 636 a.a.        Molecular weight: 68768.73 Da        Isoelectric Point: 8.6901

>NTDB_id=23330 PD_RS08890 WP_011098213.1 1966569..1968479(-) (comQ/pilQ) [Xylella fastidiosa Temecula1]
MIDLRDRMMTLFEVLGLRFVRRIASLRVCEIWVCIAFAWCCIPGTVSAENKQAIPVAKATNAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGTVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSNVTAGSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTA
NQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLNK
REINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1911 bp        

>NTDB_id=23330 PD_RS08890 WP_011098213.1 1966569..1968479(-) (comQ/pilQ) [Xylella fastidiosa Temecula1]
ATGATTGATTTAAGGGATAGAATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTGTTAGGCGTATAGCCTCGCTTCG
CGTATGTGAAATTTGGGTATGCATAGCTTTCGCTTGGTGTTGCATCCCAGGAACCGTATCGGCTGAAAACAAGCAAGCGA
TTCCAGTGGCTAAAGCTACCAATGCGCCACTAAGCGTTTCCAAAATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGAGCCACTCCTGACCTGCGTACGCAGGGTGGCACCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTCTTGCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGCTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTCCGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAATCTCAATATTGTTGCTTCCGACACTGTGCAAGGTAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCACTGACAGAAGCCAAAGGTATGGGTGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGCGATATTCCGAAGAAAGTTGCGCAAATGCGTACTCTTATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTCGGTGTTGGTGCT
GCTAGTCGTTTCAGCGATAACACTGCAACGATCGGTAGTAATGTGACTGCTGGCAGCTCCACATCGGCTACGCGGGGGCT
TAATGTTGATTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTAAAT
TTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACTGCA
AACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGGTCAAGC
CACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGTTTC
TCAACATGACTGTCAAGAAGGACGAGATTGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAACAAG
CGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCGTAA
TAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAACAAA
AGGCCGAGCTTTTGATTTTCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCGGTGCATTGA

Domains

Predicted by InterProScan.

Bacterial type II and III secretion system protein (Secretin)

(462-627)

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)

Secretin and TonB N terminus short domain (STN)

(222-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I8B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

39.731

93.396

0.371
  pilQ Acinetobacter baumannii strain A118

37.48

96.069

0.36
  pilQ Acinetobacter baumannii D1279779

37.48

96.069

0.36