Detailed information NTG0233118

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CCR98_RS16475
• Genome accession: NZ_CP021768
• Coordinates: 3512062..3513435 (+)
• Length: 457 a.a.
• NCBI ID: WP_087923444.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. WZN-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3507062..3518435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCR98_RS16460 (CCR98_16465)	sucD	3507917..3508792 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
CCR98_RS16465 (CCR98_16470)	sucC	3508813..3509982 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
CCR98_RS16470 (CCR98_16475)	-	3510388..3512001 (+)	1614	WP_087923443.1	ATP-binding protein	-
CCR98_RS16475 (CCR98_16480)	pilR	3512062..3513435 (+)	1374	WP_087923444.1	sigma-54 dependent transcriptional regulator	Regulator
CCR98_RS21115	-	3513626..3513955 (+)	330	WP_157721540.1	hypothetical protein	-
CCR98_RS16480 (CCR98_16485)	-	3513927..3514682 (+)	756	WP_087923445.1	zeta toxin family protein	-
CCR98_RS16485 (CCR98_16490)	pilB	3514733..3516463 (-)	1731	WP_087923446.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CCR98_RS16490 (CCR98_16495)	-	3516688..3517095 (-)	408	WP_087923447.1	pilin	-
CCR98_RS16495 (CCR98_16500)	pilA/pilAI	3517212..3517628 (-)	417	WP_087923448.1	pilin	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49640.91 Da
• Isoelectric Point: 6.4424

>NTDB_id=233118 CCR98_RS16475 WP_087923444.1 3512062..3513435(+) (pilR) [Stenotrophomonas sp. WZN-1]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMEVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=233118 CCR98_RS16475 WP_087923444.1 3512062..3513435(+) (pilR) [Stenotrophomonas sp. WZN-1]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACGGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTAGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAGCTCAACAACACCGAGCGCCCCGCGCCCGGTCCCGCCG
CCGAACAGGGCGCGCGCCTGCTTGGCGACTCGCCGGCCATGGAGGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCGCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTCGACGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGCGCCGC
CAACGAAGAGCCGGTGGACGTGCGCATCCTTTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGGCTGGCCCGCAGCCACGGCCGCCCGACGCCGCTGCTGGCGCCGTCTGCACTGGACGC
GCTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCCCCGCGCACGCCCGGCAGCGCAGCGCACGCCGAAGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
GGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.719	99.781	0.626
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49