Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C6P67_RS19015 Genome accession   NZ_CP027371
Coordinates   3618562..3619194 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2015C-3905     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3613562..3624194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P67_RS18985 yheS 3613731..3615644 (+) 1914 WP_000634793.1 ABC transporter ATP-binding protein -
  C6P67_RS18990 yheT 3615644..3616666 (+) 1023 WP_000057405.1 hydrolase -
  C6P67_RS18995 yheU 3616660..3616878 (+) 219 WP_000907085.1 YheU family protein -
  C6P67_RS19000 prkB 3616932..3617801 (+) 870 WP_001274680.1 phosphoribulokinase -
  C6P67_RS19005 yhfA 3617856..3618260 (-) 405 WP_001148908.1 OsmC family protein -
  C6P67_RS19015 crp 3618562..3619194 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  C6P67_RS19020 yhfK 3619245..3621335 (+) 2091 WP_001356072.1 YccS/YhfK family putative transporter -
  C6P67_RS19025 argD 3621402..3622622 (-) 1221 WP_000963766.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  C6P67_RS19030 pabA 3622708..3623271 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  C6P67_RS19035 fic 3623303..3623905 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  C6P67_RS19040 yhfG 3623895..3624062 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=233105 C6P67_RS19015 WP_000242755.1 3618562..3619194(+) (crp) [Escherichia coli strain 2015C-3905]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=233105 C6P67_RS19015 WP_000242755.1 3618562..3619194(+) (crp) [Escherichia coli strain 2015C-3905]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment