Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6P67_RS14555 Genome accession   NZ_CP027371
Coordinates   2777889..2778626 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2015C-3905     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2772889..2783626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P67_RS14540 clpC 2773343..2775916 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6P67_RS14545 yfiH 2776046..2776777 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6P67_RS14550 rluD 2776774..2777754 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6P67_RS14555 comL 2777889..2778626 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6P67_RS14565 raiA 2778897..2779238 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6P67_RS14570 pheL 2779342..2779389 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6P67_RS14575 pheA 2779488..2780648 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6P67_RS14580 tyrA 2780691..2781812 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6P67_RS14585 aroF 2781823..2782893 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6P67_RS14590 yfiL 2783103..2783468 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=233088 C6P67_RS14555 WP_000197686.1 2777889..2778626(+) (comL) [Escherichia coli strain 2015C-3905]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=233088 C6P67_RS14555 WP_000197686.1 2777889..2778626(+) (comL) [Escherichia coli strain 2015C-3905]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment