Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CDA09_RS19235 Genome accession   NZ_CP021731
Coordinates   4141686..4143083 (-) Length   465 a.a.
NCBI ID   WP_121430116.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4136686..4148083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS19195 (CDA09_19170) - 4136801..4137127 (+) 327 WP_121430109.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CDA09_RS19200 (CDA09_19175) - 4137312..4137557 (+) 246 WP_121430110.1 hypothetical protein -
  CDA09_RS19205 (CDA09_19180) - 4137562..4137960 (+) 399 WP_121430111.1 type II toxin-antitoxin system VapC family toxin -
  CDA09_RS19210 (CDA09_19185) - 4138147..4138476 (+) 330 WP_121430112.1 addiction module antidote protein -
  CDA09_RS19215 (CDA09_19190) - 4138606..4139709 (+) 1104 WP_121430113.1 transposase -
  CDA09_RS19220 (CDA09_19195) - 4139818..4140081 (+) 264 WP_217351263.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  CDA09_RS19225 (CDA09_19200) - 4140078..4140485 (+) 408 WP_121430114.1 type II toxin-antitoxin system VapC family toxin -
  CDA09_RS19230 (CDA09_19205) - 4140715..4141545 (+) 831 WP_121430115.1 hypothetical protein -
  CDA09_RS19235 (CDA09_19210) pilR 4141686..4143083 (-) 1398 WP_121430116.1 sigma-54 dependent transcriptional regulator Regulator
  CDA09_RS19240 (CDA09_19215) - 4143080..4144648 (-) 1569 WP_121430117.1 PAS domain-containing sensor histidine kinase -
  CDA09_RS19245 (CDA09_19220) - 4144651..4144905 (-) 255 WP_121430118.1 PP0621 family protein -
  CDA09_RS19250 (CDA09_19225) - 4144958..4146115 (-) 1158 WP_121430119.1 pyridoxal phosphate-dependent aminotransferase -
  CDA09_RS19255 (CDA09_19230) mtnA 4146369..4147436 (+) 1068 WP_121430120.1 S-methyl-5-thioribose-1-phosphate isomerase -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50981.22 Da        Isoelectric Point: 6.0023

>NTDB_id=232929 CDA09_RS19235 WP_121430116.1 4141686..4143083(-) (pilR) [Azoarcus sp. DN11]
MNTSERRSRPAGVDVLVIDDEEDIREVLELSLLRMGLACDTAGTVEEARRLLGEKTYRLCLTDMRLPDGDGLELVAHIQS
HAPGLPVAVITAFGSIETAIRALKCGAFDFVTKPVELKALRELVNHALKLQAPSAPAPGNGNGTRPLIGNSPALEHLRTQ
IAKLARNQAPVFIQGESGTGKEVIARLIHELGPRAAAPFVPVNCGAIPPELMESEFFGHRKGAFTGAVFDKDGLFQAARG
GTLFLDEVADLPLAMQVKLLRAIQERAVRPVGAHAEESVDVRILSASHRDLAQLVAEGKFRQDLYFRINVITLRVPPLRE
RPEDIASLATHVLARLAERDRVPPHRLSPEATAALSRHPFPGNVRELENLLERACALCDGDEIGIGDIDLQRSEDAARPL
PASPYGSPAQPSFDGDEDADGATDDERIRVLRMLDDTRWNRSEAARRLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=232929 CDA09_RS19235 WP_121430116.1 4141686..4143083(-) (pilR) [Azoarcus sp. DN11]
ATGAACACATCCGAACGACGCAGCCGCCCCGCCGGTGTCGACGTCCTCGTCATCGACGACGAGGAAGACATTCGCGAAGT
TCTGGAACTCTCGCTGCTGCGCATGGGCCTCGCCTGCGACACCGCCGGGACCGTCGAGGAAGCGCGCCGCCTGCTCGGCG
AGAAGACCTACCGCCTGTGCCTCACCGACATGCGCCTGCCCGACGGCGACGGACTCGAGCTCGTCGCGCACATCCAGTCG
CACGCGCCCGGCCTGCCGGTCGCGGTGATCACCGCTTTCGGCAGCATCGAGACCGCGATCCGCGCGCTGAAATGCGGCGC
CTTCGATTTCGTCACCAAGCCGGTCGAACTCAAGGCCCTGCGCGAACTCGTCAATCACGCCCTGAAACTCCAGGCGCCCA
GCGCGCCCGCGCCGGGCAACGGCAACGGCACGCGCCCGCTCATCGGCAACTCGCCTGCCCTCGAACACCTGCGCACCCAG
ATCGCCAAGCTCGCACGCAACCAGGCGCCGGTCTTCATCCAGGGCGAATCCGGCACCGGCAAGGAAGTCATCGCCCGCCT
GATCCACGAGCTCGGCCCGCGCGCCGCCGCGCCCTTCGTGCCGGTGAACTGCGGCGCGATTCCGCCCGAACTCATGGAAA
GCGAATTCTTCGGCCACCGCAAGGGCGCCTTCACCGGCGCCGTGTTCGACAAGGACGGCCTCTTCCAGGCCGCGCGCGGC
GGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCGCTGGCGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGCGCGC
CGTGCGCCCGGTCGGCGCCCACGCCGAGGAATCGGTCGACGTGCGCATCCTCTCGGCCTCGCATCGCGACCTCGCGCAAC
TGGTCGCCGAAGGCAAGTTCCGCCAGGACCTCTATTTCCGCATCAACGTCATCACCCTGCGCGTGCCGCCACTGCGCGAG
CGGCCCGAGGACATCGCCAGCCTCGCCACGCACGTCCTCGCCCGGCTCGCCGAGCGCGACCGCGTGCCGCCGCACCGCCT
GTCGCCCGAGGCCACGGCGGCGCTGTCCCGCCATCCCTTTCCGGGCAACGTCCGCGAGCTGGAGAACCTGCTCGAGCGCG
CCTGCGCGCTGTGCGACGGCGACGAGATCGGCATCGGCGACATCGACCTCCAGCGCAGCGAGGATGCCGCCAGGCCCCTT
CCCGCTTCGCCGTACGGGAGTCCGGCACAGCCGTCGTTCGACGGCGACGAGGATGCCGACGGTGCCACCGACGACGAACG
CATCCGGGTCCTGCGCATGCTCGACGACACACGCTGGAACCGTTCGGAGGCCGCGCGGCGCCTGGGGATGACACTCAGGC
AGCTGCGCTACCGGCTGCAGAAGTGGGGGATGGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(426-462)

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.645

96.989

0.578
  pilR Acinetobacter baumannii strain A118

47.65

100

0.48

Multiple sequence alignment