Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CCD88_RS11535 Genome accession   NZ_CP021724
Coordinates   2031317..2031781 (+) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026317..2036781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS11535 (CCD88_11730) comE 2031317..2031781 (+) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene
  CCD88_RS11540 (CCD88_11735) comP 2031869..2032318 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  CCD88_RS13270 (CCD88_11740) - 2032408..2032748 (-) 341 Protein_1969 5'-nucleotidase -
  CCD88_RS11550 (CCD88_11745) - 2032860..2033072 (-) 213 WP_002224145.1 SWIM zinc finger domain-containing protein -
  CCD88_RS11555 (CCD88_11755) - 2033304..2033777 (+) 474 Protein_1971 IS5/IS1182 family transposase -
  CCD88_RS11565 (CCD88_11765) - 2034131..2035591 (-) 1461 WP_002230014.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=232838 CCD88_RS11535 WP_010981060.1 2031317..2031781(+) (comE) [Neisseria meningitidis strain 12-330]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=232838 CCD88_RS11535 WP_010981060.1 2031317..2031781(+) (comE) [Neisseria meningitidis strain 12-330]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCACCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment