Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   CCD88_RS08170 Genome accession   NZ_CP021724
Coordinates   1459122..1459766 (-) Length   214 a.a.
NCBI ID   WP_002229027.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454122..1464766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS08135 (CCD88_08275) ftsL 1454501..1454764 (-) 264 WP_002232818.1 cell division protein FtsL -
  CCD88_RS08140 (CCD88_08280) rsmH 1454761..1455747 (-) 987 WP_002229044.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  CCD88_RS08145 (CCD88_08285) mraZ 1455744..1456199 (-) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  CCD88_RS08150 (CCD88_08290) - 1456505..1457695 (+) 1191 WP_161976891.1 class I SAM-dependent methyltransferase -
  CCD88_RS08165 (CCD88_08310) - 1458268..1459089 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  CCD88_RS08170 (CCD88_08315) dsbA1 1459122..1459766 (-) 645 WP_002229027.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CCD88_RS08175 (CCD88_08320) ftsN 1459769..1460632 (-) 864 WP_002229030.1 cell division protein FtsN -
  CCD88_RS08180 (CCD88_08325) comM 1460738..1462234 (-) 1497 WP_002229025.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CCD88_RS08185 (CCD88_08330) - 1462248..1462568 (-) 321 WP_002229037.1 accessory factor UbiK family protein -
  CCD88_RS08195 (CCD88_08340) putP 1463052..1464578 (+) 1527 WP_002229034.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23939.93 Da        Isoelectric Point: 9.8294

>NTDB_id=232822 CCD88_RS08170 WP_002229027.1 1459122..1459766(-) (dsbA1) [Neisseria meningitidis strain 12-330]
MKLKHLLPLLLSAALSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=232822 CCD88_RS08170 WP_002229027.1 1459122..1459766(-) (dsbA1) [Neisseria meningitidis strain 12-330]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGCGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449

Multiple sequence alignment