Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CCD88_RS08180 Genome accession   NZ_CP021724
Coordinates   1460738..1462234 (-) Length   498 a.a.
NCBI ID   WP_002229025.1    Uniprot ID   A0A9K2PR40
Organism   Neisseria meningitidis strain 12-330     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1455738..1467234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS08145 (CCD88_08285) mraZ 1455744..1456199 (-) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  CCD88_RS08150 (CCD88_08290) - 1456505..1457695 (+) 1191 WP_161976891.1 class I SAM-dependent methyltransferase -
  CCD88_RS08165 (CCD88_08310) - 1458268..1459089 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  CCD88_RS08170 (CCD88_08315) dsbA1 1459122..1459766 (-) 645 WP_002229027.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CCD88_RS08175 (CCD88_08320) ftsN 1459769..1460632 (-) 864 WP_002229030.1 cell division protein FtsN -
  CCD88_RS08180 (CCD88_08325) comM 1460738..1462234 (-) 1497 WP_002229025.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CCD88_RS08185 (CCD88_08330) - 1462248..1462568 (-) 321 WP_002229037.1 accessory factor UbiK family protein -
  CCD88_RS08195 (CCD88_08340) putP 1463052..1464578 (+) 1527 WP_002229034.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53477.48 Da        Isoelectric Point: 6.9339

>NTDB_id=232823 CCD88_RS08180 WP_002229025.1 1460738..1462234(-) (comM) [Neisseria meningitidis strain 12-330]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLAEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECSVPQMPSEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSHRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDSQARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=232823 CCD88_RS08180 WP_002229025.1 1460738..1462234(-) (comM) [Neisseria meningitidis strain 12-330]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCACATTTCAACATCGTCGGACTGCCCGATACGGAAGTCAAAGAAAGTCGCGACCGCGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATCACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGCGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGCGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAACGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGTATCGAACCTTTGGCGCAAACCGAATGTTCCGTACCGCAAATGCCGTCTGAACA
TGGCGGACAACCTGATTTGTGTGATGTGAAAGGTCAGCACACTGCCCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCAGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTTGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAGCAACAACTCGACAGCCACCGTCC
TTTCCGCAGTCCGCATCACAGTGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAGATTTCAT
TGGCGCACCACGGCGTATTGTTTTTGGACGAGCTGCCCGAGTTCGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AAATTTCCGGCCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCCAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCGGGTGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCCCGCGACAAACAATACGCGCGGCAGGGCAAAGT
CAACGCCGCTTTGAGTGTCAGCGAACTCGATTCCCAAGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.386

100

0.538
  comM Vibrio campbellii strain DS40M4

52.4

100

0.526
  comM Haemophilus influenzae Rd KW20

49.801

100

0.502
  comM Glaesserella parasuis strain SC1401

48.81

100

0.494
  comM Legionella pneumophila str. Paris

46.733

100

0.474
  comM Legionella pneumophila strain ERS1305867

46.733

100

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

100

0.434

Multiple sequence alignment