Detailed information
Bioinformatically predicted
Overview
| Name | pilX | Type | Machinery gene |
| Locus tag | CCD88_RS03080 | Genome accession | NZ_CP021724 |
| Coordinates | 532628..533101 (+) | Length | 157 a.a. |
| NCBI ID | WP_002229319.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain 12-330 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 527628..538101
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCD88_RS03055 (CCD88_03070) | dnaB | 528075..529481 (+) | 1407 | WP_002219448.1 | replicative DNA helicase | - |
| CCD88_RS03060 (CCD88_03075) | pilH | 529783..530451 (+) | 669 | WP_002259882.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| CCD88_RS03065 (CCD88_03080) | pilV | 530481..531101 (+) | 621 | WP_002253554.1 | type IV pilus modification protein PilV | Machinery gene |
| CCD88_RS03070 (CCD88_03085) | pilJ | 531098..532051 (+) | 954 | WP_002259883.1 | PilW family protein | Machinery gene |
| CCD88_RS03075 (CCD88_03090) | pilK | 532030..532623 (+) | 594 | WP_002229321.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| CCD88_RS03080 (CCD88_03095) | pilX | 532628..533101 (+) | 474 | WP_002229319.1 | PilX family type IV pilin | Machinery gene |
| CCD88_RS03095 (CCD88_03110) | - | 534914..535342 (-) | 429 | Protein_528 | AzlC family ABC transporter permease | - |
| CCD88_RS03100 (CCD88_03115) | dut | 535484..535936 (+) | 453 | WP_002229326.1 | dUTP diphosphatase | - |
| CCD88_RS03105 (CCD88_03120) | dapC | 536013..537200 (+) | 1188 | WP_002259885.1 | succinyldiaminopimelate transaminase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17450.13 Da Isoelectric Point: 8.8574
>NTDB_id=232809 CCD88_RS03080 WP_002229319.1 532628..533101(+) (pilX) [Neisseria meningitidis strain 12-330]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVDFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVDFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK
Nucleotide
Download Length: 474 bp
>NTDB_id=232809 CCD88_RS03080 WP_002229319.1 532628..533101(+) (pilX) [Neisseria meningitidis strain 12-330]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGGATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGGATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilX | Neisseria meningitidis 8013 |
97.452 |
100 |
0.975 |
| pilL | Neisseria gonorrhoeae MS11 |
87.261 |
100 |
0.873 |