Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CCD88_RS03075 Genome accession   NZ_CP021724
Coordinates   532030..532623 (+) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527030..537623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS03045 (CCD88_03060) - 527325..527912 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD88_RS03055 (CCD88_03070) dnaB 528075..529481 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD88_RS03060 (CCD88_03075) pilH 529783..530451 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD88_RS03065 (CCD88_03080) pilV 530481..531101 (+) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  CCD88_RS03070 (CCD88_03085) pilJ 531098..532051 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD88_RS03075 (CCD88_03090) pilK 532030..532623 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD88_RS03080 (CCD88_03095) pilX 532628..533101 (+) 474 WP_002229319.1 PilX family type IV pilin Machinery gene
  CCD88_RS03095 (CCD88_03110) - 534914..535342 (-) 429 Protein_528 AzlC family ABC transporter permease -
  CCD88_RS03100 (CCD88_03115) dut 535484..535936 (+) 453 WP_002229326.1 dUTP diphosphatase -
  CCD88_RS03105 (CCD88_03120) dapC 536013..537200 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=232808 CCD88_RS03075 WP_002229321.1 532030..532623(+) (pilK) [Neisseria meningitidis strain 12-330]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=232808 CCD88_RS03075 WP_002229321.1 532030..532623(+) (pilK) [Neisseria meningitidis strain 12-330]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment