Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   S100141_RS00455 Genome accession   NZ_CP021669
Coordinates   90808..91413 (+) Length   201 a.a.
NCBI ID   WP_087634995.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100141     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 85808..96413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100141_RS00425 (S100141_00089) - 86170..86511 (-) 342 WP_014418765.1 hypothetical protein -
  S100141_RS00435 (S100141_00090) degQ 86976..87116 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  S100141_RS00440 (S100141_00091) comQ 87247..88110 (+) 864 WP_269768362.1 class 1 isoprenoid biosynthesis enzyme Regulator
  S100141_RS00445 (S100141_00092) - 88184..88360 (+) 177 WP_087634937.1 competence pheromone ComX -
  S100141_RS00450 (S100141_00093) comP 88380..90689 (+) 2310 WP_087634938.1 histidine kinase Regulator
  S100141_RS00455 (S100141_00094) comA 90808..91413 (+) 606 WP_087634995.1 response regulator transcription factor Regulator
  S100141_RS00460 (S100141_00095) - 91435..91818 (+) 384 WP_017419422.1 hotdog fold thioesterase -
  S100141_RS00465 (S100141_00096) mnhG 91858..92232 (-) 375 WP_017419421.1 monovalent cation/H(+) antiporter subunit G -
  S100141_RS00470 (S100141_00097) - 92216..92500 (-) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  S100141_RS00475 (S100141_00098) - 92500..92976 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  S100141_RS00480 (S100141_00099) - 92982..94463 (-) 1482 WP_017419418.1 Na+/H+ antiporter subunit D -
  S100141_RS00485 (S100141_00100) - 94456..94796 (-) 341 Protein_95 Na(+)/H(+) antiporter subunit C -
  S100141_RS00490 (S100141_00101) - 94796..95227 (-) 432 WP_087634939.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22841.90 Da        Isoelectric Point: 4.8464

>NTDB_id=232330 S100141_RS00455 WP_087634995.1 90808..91413(+) (comA) [Bacillus licheniformis strain SRCM100141]
MEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKIIVYTGYEVEDYFE
ESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERHILQEVEKGLTNQE
IADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=232330 S100141_RS00455 WP_087634995.1 90808..91413(+) (comA) [Bacillus licheniformis strain SRCM100141]
ATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCTTTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATT
CGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAATGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGC
TTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATCATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAA
GAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAACCGAATCTAAAGAGAAAATCATGCAATACATATATCACGT
GCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAACAGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCC
CTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCATATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAA
ATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATACAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTC
CCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTACTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-104)

Bacterial regulatory proteins, luxR family (GerE)

(140-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.075

100

0.851

Multiple sequence alignment