Detailed information NTG0232196

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: CCZ28_RS10120
• Genome accession: NZ_CP021645
• Coordinates: 2274286..2276526 (-)
• Length: 746 a.a.
• NCBI ID: WP_140217723.1
• Uniprot ID: A0A4Y5W4J1
• Organism: Pseudomonas oryzihabitans strain CS51
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2269286..2281526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCZ28_RS10085 (CCZ28_10075)	murB	2269714..2270736 (-)	1023	WP_140217711.1	UDP-N-acetylmuramate dehydrogenase	-
CCZ28_RS10090 (CCZ28_10080)	-	2270726..2271199 (-)	474	WP_140217713.1	low molecular weight protein-tyrosine-phosphatase	-
CCZ28_RS10095 (CCZ28_10085)	kdsB	2271200..2271964 (-)	765	WP_140217715.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CCZ28_RS10100 (CCZ28_10090)	-	2271961..2272146 (-)	186	WP_007162406.1	Trm112 family protein	-
CCZ28_RS10105 (CCZ28_10095)	lpxK	2272161..2273168 (-)	1008	WP_140217717.1	tetraacyldisaccharide 4'-kinase	-
CCZ28_RS10110 (CCZ28_10100)	-	2273165..2273605 (-)	441	WP_140217719.1	biopolymer transporter ExbD	-
CCZ28_RS10115 (CCZ28_10105)	exbB	2273602..2274237 (-)	636	WP_140217721.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
CCZ28_RS10120 (CCZ28_10110)	comA	2274286..2276526 (-)	2241	WP_140217723.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CCZ28_RS10125 (CCZ28_10115)	-	2276640..2277884 (-)	1245	WP_140217725.1	lipoprotein-releasing ABC transporter permease subunit	-
CCZ28_RS10130 (CCZ28_10120)	lolD	2277892..2278593 (-)	702	WP_140217727.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
CCZ28_RS10135 (CCZ28_10125)	-	2278586..2279836 (-)	1251	WP_140217729.1	lipoprotein-releasing ABC transporter permease subunit	-
CCZ28_RS10140 (CCZ28_10130)	-	2279943..2280494 (+)	552	WP_058793038.1	PilZ domain-containing protein	-
CCZ28_RS10145 (CCZ28_10135)	-	2280491..2280781 (+)	291	WP_140217731.1	phosphodiesterase	-
CCZ28_RS10150 (CCZ28_10140)	-	2280803..2281519 (+)	717	WP_140217733.1	glycerophosphodiester phosphodiesterase	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 79302.73 Da
• Isoelectric Point: 9.7715

>NTDB_id=232196 CCZ28_RS10120 WP_140217723.1 2274286..2276526(-) (comA) [Pseudomonas oryzihabitans strain CS51]
MRAALLAFALGVLVLRALPALPSLPLLAALGAVAVVLLWTRLFVLGAFGFGLVWAVLNGHWALHDRLDPALEQRVLWIEG
QVSGLPVVGADSVGFVLSQPTSRRDLKLPARLRLNWYGGPRPLAGERWRLAVELRSPAGLSNALGQDREAWLLAQGIGAT
GSVKDGQRLSAASGLATWRDGIRQYLHTRDPAGQGGLLAALVVGDASGITDAQWQLFQDTGTVHLMVISGQHIGLVALGV
YAGVVTLARRGRWPSRLPWRLSAAVLAIATALGYGLLAGFEVPVQRACVMVTLGLLWQLGRQQVRLGDAVLLALVLILAA
NPLVSLLPGFWLSFGAVLLLLWSFAGRLGRLPPLLTLGRAQWCMAVGLAPLLLALGLPLSISGPLANAVAVPLMDMAIVP
LALVGTLLSLLWSPLGEPALLLAGGLLQLLLWLLAWLAQLATAWQPAIAPTWALWLAGLGALLALLPAGVPLRGCGVLLM
LPALFPPIPLPAPGQARITVLDVGQGLAVLVRTRDHTLLYDAGPRQGSYDSGARVVLPNLRGAGVQALDVLLLSHADADH
AGGAPTVAKGLPPGQVLSGEAGRLQPGLRARDCEDGANWHWNEVSFTTWWHASADSNASSCVLRIEAQGERLLLTGDIDE
RREAELVASGLPLAAEWLSAPHHGSRSGSSACFIDAVQPRGVLISRGQHNRYGHPHPLVVERYRERGVLAYDTAELGALS
WTLGKWEAPRGQREVARWWRTPPPTP

Nucleotide

• Length: 2241 bp

>NTDB_id=232196 CCZ28_RS10120 WP_140217723.1 2274286..2276526(-) (comA) [Pseudomonas oryzihabitans strain CS51]
ATGCGCGCCGCTCTGCTCGCGTTCGCCCTGGGTGTGCTGGTCCTGCGCGCCTTGCCGGCGTTGCCTTCGCTGCCCTTACT
GGCCGCCCTCGGCGCGGTCGCCGTCGTGCTGCTCTGGACGCGCCTGTTCGTCTTGGGGGCCTTTGGCTTCGGCCTGGTCT
GGGCGGTGCTCAATGGCCACTGGGCCCTGCACGATCGCCTCGATCCCGCTTTGGAACAGCGGGTGCTGTGGATCGAAGGC
CAGGTGAGCGGCCTGCCGGTGGTGGGGGCCGATTCGGTCGGCTTCGTGCTCAGCCAACCGACCAGCCGTCGTGATCTGAA
ACTCCCGGCGCGGCTACGCCTGAATTGGTACGGCGGCCCGCGACCCCTGGCCGGCGAGCGCTGGCGACTGGCCGTGGAGT
TGCGCAGTCCGGCCGGCCTGAGCAATGCCCTGGGGCAGGATCGCGAAGCTTGGCTGCTGGCCCAGGGCATCGGCGCCACC
GGTAGCGTCAAGGACGGCCAGCGACTCAGCGCCGCCAGTGGCCTGGCGACCTGGCGCGACGGCATTCGGCAATACCTGCA
TACCCGCGATCCGGCCGGGCAGGGTGGGCTGCTCGCCGCCCTGGTGGTGGGCGATGCCTCGGGCATCACCGACGCCCAGT
GGCAGCTGTTCCAGGACACCGGCACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCGGCCTGGTCGCCCTGGGCGTC
TATGCCGGGGTGGTCACCCTGGCACGCCGCGGTCGCTGGCCGAGTCGGCTGCCCTGGCGGCTATCCGCCGCCGTGTTGGC
CATCGCCACCGCCCTGGGCTACGGCCTGCTGGCCGGTTTCGAGGTGCCGGTCCAGCGCGCCTGCGTCATGGTCACCCTGG
GGCTGCTCTGGCAACTGGGTCGCCAGCAGGTCCGGCTGGGCGATGCCGTGCTGCTGGCCTTGGTGTTGATCCTGGCCGCC
AATCCGCTGGTCAGTCTGCTGCCCGGCTTCTGGCTGTCCTTCGGCGCCGTGCTGTTGCTGCTGTGGAGCTTCGCCGGACG
CCTGGGGCGATTGCCTCCCTTGCTCACCCTGGGGCGCGCCCAGTGGTGCATGGCCGTGGGCCTGGCGCCCCTGTTGCTGG
CGCTGGGACTGCCCCTGAGTATCAGTGGTCCCCTGGCCAACGCCGTCGCCGTACCGCTGATGGATATGGCCATCGTGCCG
CTGGCGCTGGTGGGTACGCTGCTGTCCCTGCTGTGGTCGCCCCTCGGCGAGCCGGCGCTGCTGCTGGCTGGTGGCTTGCT
GCAGCTCTTGCTCTGGCTGCTGGCGTGGCTGGCGCAGCTCGCCACCGCCTGGCAGCCGGCGATTGCGCCGACCTGGGCGC
TCTGGCTGGCGGGCCTGGGTGCCTTGCTCGCCCTGTTACCCGCGGGCGTGCCGCTGCGTGGTTGCGGGGTGCTGCTCATG
CTGCCGGCGCTGTTTCCGCCGATCCCGCTGCCCGCACCGGGCCAGGCGCGGATCACCGTGCTGGATGTGGGCCAGGGTCT
GGCCGTGCTGGTACGCACCCGGGATCACACCCTGCTTTACGACGCCGGTCCGCGCCAGGGCAGCTACGACAGCGGGGCCC
GCGTGGTCTTGCCCAATCTGCGCGGTGCCGGTGTTCAGGCGCTTGACGTATTGCTGCTCAGCCATGCCGATGCCGACCAT
GCCGGCGGTGCTCCGACCGTGGCCAAGGGGTTGCCTCCGGGTCAGGTACTCAGCGGCGAGGCAGGTCGCCTGCAACCGGG
CCTGAGGGCACGGGACTGCGAGGATGGCGCCAACTGGCACTGGAACGAGGTCAGTTTCACCACCTGGTGGCATGCCAGCG
CGGATTCCAATGCCTCCTCCTGCGTGCTTCGGATCGAGGCCCAGGGCGAGCGCCTGCTGCTGACCGGCGACATCGACGAG
CGCCGCGAAGCCGAATTGGTGGCCAGCGGCCTGCCGCTCGCGGCTGAGTGGCTCAGCGCCCCGCACCATGGCAGTCGCAG
CGGCTCCAGCGCCTGTTTCATCGACGCCGTGCAGCCACGTGGCGTGCTGATCTCCCGCGGCCAGCACAATCGCTATGGGC
ATCCACATCCGCTGGTGGTCGAGCGCTATCGCGAGCGCGGTGTGCTGGCCTACGACACCGCCGAACTTGGTGCCCTGAGC
TGGACCCTTGGTAAATGGGAGGCACCGCGCGGTCAGCGTGAGGTAGCGCGTTGGTGGCGGACGCCTCCGCCGACACCCTG
A

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Competence protein (Competence) (201-466)

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-682)

3D structure

• AlphaFold DB: A0A4Y5W4J1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	54.294	96.783	0.525
comA	Ralstonia pseudosolanacearum GMI1000	35.784	100	0.391