Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CCZ28_RS10115 Genome accession   NZ_CP021645
Coordinates   2273602..2274237 (-) Length   211 a.a.
NCBI ID   WP_140217721.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain CS51     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2268602..2279237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ28_RS10080 (CCZ28_10070) petA 2269145..2269717 (-) 573 WP_140217709.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  CCZ28_RS10085 (CCZ28_10075) murB 2269714..2270736 (-) 1023 WP_140217711.1 UDP-N-acetylmuramate dehydrogenase -
  CCZ28_RS10090 (CCZ28_10080) - 2270726..2271199 (-) 474 WP_140217713.1 low molecular weight protein-tyrosine-phosphatase -
  CCZ28_RS10095 (CCZ28_10085) kdsB 2271200..2271964 (-) 765 WP_140217715.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CCZ28_RS10100 (CCZ28_10090) - 2271961..2272146 (-) 186 WP_007162406.1 Trm112 family protein -
  CCZ28_RS10105 (CCZ28_10095) lpxK 2272161..2273168 (-) 1008 WP_140217717.1 tetraacyldisaccharide 4'-kinase -
  CCZ28_RS10110 (CCZ28_10100) - 2273165..2273605 (-) 441 WP_140217719.1 biopolymer transporter ExbD -
  CCZ28_RS10115 (CCZ28_10105) exbB 2273602..2274237 (-) 636 WP_140217721.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CCZ28_RS10120 (CCZ28_10110) comA 2274286..2276526 (-) 2241 WP_140217723.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCZ28_RS10125 (CCZ28_10115) - 2276640..2277884 (-) 1245 WP_140217725.1 lipoprotein-releasing ABC transporter permease subunit -
  CCZ28_RS10130 (CCZ28_10120) lolD 2277892..2278593 (-) 702 WP_140217727.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23059.13 Da        Isoelectric Point: 6.4953

>NTDB_id=232195 CCZ28_RS10115 WP_140217721.1 2273602..2274237(-) (exbB) [Pseudomonas oryzihabitans strain CS51]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRSSRIMPPNLLAQVWRWIQDKQLNAERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGGRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAA
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDIIHGDREVEFREGAAA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=232195 CCZ28_RS10115 WP_140217721.1 2273602..2274237(-) (exbB) [Pseudomonas oryzihabitans strain CS51]
GTGTTCGAAATGGTCAAAGCAGGCGGCTGGATGATGCTGCCGATCATCCTCAGTTCCATCCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTCAGGAGCAGCCGGATCATGCCGCCCAATCTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AGCAACTCAACGCCGAGCGCCTGCGCGAGCTGCGTGCCGGTTCGCCGCTGGGTGACATCCTCGCCGCGGGGCTGACCAAT
TCCCGCCATGGTCGCGACATCATGAAGGAAGCCATCGAGGAAGCCGGTGGCCGGGTGGTGCACGACCTCGAACGCTATCT
CAATACCCTGGGCAGCATCGCCGCCTTGGCCCCCTTGATGGGTCTGCTCGGCACGGTGTTCGGCATGATCGACATCTTCA
GCGCCTTCATGAACGACGGCATGGCCAATGCGCCCATCCTTGCCGGCGGCATCTCCAAGGCGCTGGTCACCACCGCTGCC
GGTCTGCTGGTGGCCATTCCGGCGGTGTTCTTCCATCGCTATCTGCTGCGCCGGGTGGACGAACTGGTGGTGGGCATGGA
GCAGGAGGCGGTCAAGCTGGTAGACATCATCCACGGCGATCGCGAGGTGGAATTCCGCGAAGGAGCCGCCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

74.286

99.526

0.739

Multiple sequence alignment