Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | B4U42_RS02480 | Genome accession | NZ_CP021644 |
| Coordinates | 474498..474839 (+) | Length | 113 a.a. |
| NCBI ID | WP_005714015.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis 29755 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 469498..479839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4U42_RS02460 (B4U42_02410) | - | 470773..471360 (-) | 588 | WP_005714008.1 | NAD(P)H-dependent oxidoreductase | - |
| B4U42_RS02465 (B4U42_02415) | waaF | 471456..472508 (-) | 1053 | WP_005714010.1 | lipopolysaccharide heptosyltransferase II | - |
| B4U42_RS02470 (B4U42_02420) | - | 472517..472915 (-) | 399 | WP_005714011.1 | MliC family protein | - |
| B4U42_RS02475 (B4U42_02425) | - | 472975..474240 (-) | 1266 | WP_005714013.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| B4U42_RS02480 (B4U42_02430) | comEA/comE1 | 474498..474839 (+) | 342 | WP_005714015.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| B4U42_RS02485 (B4U42_02435) | - | 474939..475384 (-) | 446 | Protein_447 | IS5 family transposase | - |
| B4U42_RS02490 (B4U42_02440) | epmA | 475525..476505 (+) | 981 | WP_035520727.1 | elongation factor P--(R)-beta-lysine ligase | - |
| B4U42_RS02495 (B4U42_02445) | - | 476558..476836 (+) | 279 | WP_005714674.1 | DUF1778 domain-containing protein | - |
| B4U42_RS02500 (B4U42_02450) | - | 476837..477334 (+) | 498 | WP_005714675.1 | GNAT family N-acetyltransferase | - |
| B4U42_RS02505 (B4U42_02455) | - | 477348..478130 (+) | 783 | WP_010786292.1 | YchF/TatD family DNA exonuclease | - |
| B4U42_RS02510 (B4U42_02460) | - | 478168..478695 (+) | 528 | WP_005714677.1 | DUF1523 family protein | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12437.29 Da Isoelectric Point: 9.8972
>NTDB_id=232160 B4U42_RS02480 WP_005714015.1 474498..474839(+) (comEA/comE1) [Glaesserella parasuis 29755]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNTNVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNTNVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
Nucleotide
Download Length: 342 bp
>NTDB_id=232160 B4U42_RS02480 WP_005714015.1 474498..474839(+) (comEA/comE1) [Glaesserella parasuis 29755]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATACGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATACGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
97.345 |
100 |
0.973 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.13 |
100 |
0.602 |
| comEA | Acinetobacter baylyi ADP1 |
57.746 |
62.832 |
0.363 |