Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MJ73_RS21015 Genome accession   NZ_CP027312
Coordinates   4092099..4092731 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2013C-3181     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4087099..4097731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ73_RS20990 yhfG 4087231..4087398 (+) 168 WP_000736860.1 YhfG family protein -
  MJ73_RS20995 fic 4087388..4087990 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  MJ73_RS21000 pabA 4088022..4088585 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  MJ73_RS21005 argD 4088671..4089891 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  MJ73_RS21010 yhfK 4089958..4092048 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  MJ73_RS21015 crp 4092099..4092731 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  MJ73_RS21025 yhfA 4093033..4093437 (+) 405 WP_001148908.1 OsmC family protein -
  MJ73_RS21030 prkB 4093492..4094361 (-) 870 WP_044803679.1 phosphoribulokinase -
  MJ73_RS21035 yheU 4094415..4094633 (-) 219 WP_000907085.1 YheU family protein -
  MJ73_RS21040 yheT 4094627..4095649 (-) 1023 WP_000057405.1 hydrolase -
  MJ73_RS21045 yheS 4095649..4097562 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=231929 MJ73_RS21015 WP_000242755.1 4092099..4092731(-) (crp) [Escherichia coli strain 2013C-3181]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=231929 MJ73_RS21015 WP_000242755.1 4092099..4092731(-) (crp) [Escherichia coli strain 2013C-3181]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467