Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CCD84_RS03110 Genome accession   NZ_CP021520
Coordinates   532241..532834 (+) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527241..537834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS03080 (CCD84_03085) - 527536..528123 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD84_RS03090 (CCD84_03095) dnaB 528286..529692 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD84_RS03095 (CCD84_03100) pilH 529994..530662 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD84_RS03100 (CCD84_03105) pilV 530692..531312 (+) 621 WP_149323756.1 type IV pilus modification protein PilV Machinery gene
  CCD84_RS03105 (CCD84_03110) pilJ 531309..532262 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD84_RS03110 (CCD84_03115) pilK 532241..532834 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD84_RS03115 (CCD84_03120) pilX 532839..533312 (+) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  CCD84_RS03130 (CCD84_03150) - 535017..535442 (-) 426 Protein_526 AzlC family ABC transporter permease -
  CCD84_RS03135 (CCD84_03155) dut 535584..536036 (+) 453 WP_002229326.1 dUTP diphosphatase -
  CCD84_RS03140 (CCD84_03160) dapC 536113..537300 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=231680 CCD84_RS03110 WP_002229321.1 532241..532834(+) (pilK) [Neisseria meningitidis strain 11-7]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=231680 CCD84_RS03110 WP_002229321.1 532241..532834(+) (pilK) [Neisseria meningitidis strain 11-7]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment