Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CCD84_RS03095 Genome accession   NZ_CP021520
Coordinates   529994..530662 (+) Length   222 a.a.
NCBI ID   WP_002259882.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-7     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524994..535662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD84_RS03070 (CCD84_03075) - 525846..526178 (+) 333 WP_002229316.1 hypothetical protein -
  CCD84_RS03075 (CCD84_03080) - 526510..527019 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CCD84_RS03080 (CCD84_03085) - 527536..528123 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD84_RS03090 (CCD84_03095) dnaB 528286..529692 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD84_RS03095 (CCD84_03100) pilH 529994..530662 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD84_RS03100 (CCD84_03105) pilV 530692..531312 (+) 621 WP_149323756.1 type IV pilus modification protein PilV Machinery gene
  CCD84_RS03105 (CCD84_03110) pilJ 531309..532262 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD84_RS03110 (CCD84_03115) pilK 532241..532834 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD84_RS03115 (CCD84_03120) pilX 532839..533312 (+) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  CCD84_RS03130 (CCD84_03150) - 535017..535442 (-) 426 Protein_526 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24781.37 Da        Isoelectric Point: 9.9145

>NTDB_id=231677 CCD84_RS03095 WP_002259882.1 529994..530662(+) (pilH) [Neisseria meningitidis strain 11-7]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=231677 CCD84_RS03095 WP_002259882.1 529994..530662(+) (pilH) [Neisseria meningitidis strain 11-7]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTTAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment