Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C1N79_RS09935 Genome accession   NZ_CP027297
Coordinates   2219113..2221257 (-) Length   714 a.a.
NCBI ID   WP_137960841.1    Uniprot ID   A0ABY6BR25
Organism   Streptomyces sp. SGAir0924     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2214113..2226257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS09920 (C1N79_09930) - 2214983..2215984 (-) 1002 WP_046250553.1 TerC family protein -
  C1N79_RS09925 (C1N79_09935) - 2216243..2218255 (-) 2013 WP_137960840.1 TerD family protein -
  C1N79_RS09930 (C1N79_09940) - 2218393..2218971 (-) 579 WP_019328123.1 TerD family protein -
  C1N79_RS09935 (C1N79_09945) uvrB 2219113..2221257 (-) 2145 WP_137960841.1 excinuclease ABC subunit UvrB Machinery gene
  C1N79_RS09940 (C1N79_09950) - 2221298..2222176 (-) 879 WP_019328121.1 MHYT domain-containing protein -
  C1N79_RS09945 (C1N79_09955) - 2222467..2223399 (+) 933 WP_050990757.1 glycerophosphodiester phosphodiesterase family protein -
  C1N79_RS09950 (C1N79_09960) - 2223433..2223987 (+) 555 WP_019328119.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C1N79_RS09955 (C1N79_09965) - 2224025..2224453 (-) 429 WP_019328118.1 VOC family protein -
  C1N79_RS09960 (C1N79_09970) - 2224572..2225480 (+) 909 WP_019328117.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80204.74 Da        Isoelectric Point: 4.7929

>NTDB_id=231645 C1N79_RS09935 WP_137960841.1 2219113..2221257(-) (uvrB) [Streptomyces sp. SGAir0924]
MRPVSQIERTVAPFEVVSPYQPSGDQPAAIAELARRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNQANGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRQSKDGKAAKAPVPSLGG
QATADGKAAKGRRKAKETAVTDRPAAELAAQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=231645 C1N79_RS09935 WP_137960841.1 2219113..2221257(-) (uvrB) [Streptomyces sp. SGAir0924]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGGCGCATCGAAGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCAGCCACCACCGCGTGGATGATCGAGAAACTCCAGCGCCCCACCCTGGTCATGGCCCCCAACAAGACCCTGGCCGCC
CAACTGGCGAACGAGTTCCGCGAACTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGGATGGTCCCCCTCCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCGCACTACGTCGCGGGACCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTGGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTGCTCGAGGCGCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCCAACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGTGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTCCCCTCCGCCCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAACGCATCGGGCAGACCGTGTACCTG
TCGGCCACCCCGGGCGCCTACGAGCTGTCCCGTTCGGACGGCGCGGTCGAGCAGATCATCCGCCCCACGGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCACGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTGGAGCTGCTGCGGGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCAGGGAGGGCCTCGACCTGCCGGAGGTCTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAAGGCGATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCGTACAACCA
GGCCAACGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGTGAGGACATCGACA
CCGAGCAGCTGCTCGGCTCGGGCTACCGCCAGTCCAAGGACGGCAAGGCCGCCAAGGCTCCCGTGCCCTCCCTCGGCGGC
CAGGCGACAGCCGACGGCAAGGCGGCCAAGGGCAGGCGGAAGGCCAAGGAGACGGCGGTCACCGACCGTCCGGCGGCGGA
GCTGGCCGCGCAGATCGAGGATCTGACCACCCGGATGCGGGCCGCCGCCGCGGACCTCCAGTTCGAGATCGCGGCCCGTC
TGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCCGGTCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(671-703)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.812

96.639

0.549
  uvrB Streptococcus pneumoniae R6

56.812

96.639

0.549
  uvrB Streptococcus pneumoniae D39

56.812

96.639

0.549