Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BJE04_RS14695 Genome accession   NC_005139
Coordinates   3126111..3126743 (+) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3121111..3131743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS14675 (VV3046) - 3123000..3123479 (+) 480 WP_011079301.1 TIGR02444 family protein -
  BJE04_RS14680 (VV3047) - 3123625..3124602 (+) 978 WP_011151313.1 hydrolase -
  BJE04_RS14685 (VV3048) - 3124658..3124870 (+) 213 WP_011079299.1 YheU family protein -
  BJE04_RS14690 (VV3049) - 3124999..3125868 (+) 870 WP_011151314.1 phosphoribulokinase -
  BJE04_RS14695 (VV3050) crp 3126111..3126743 (+) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  BJE04_RS14700 (VV3051) - 3126954..3127745 (-) 792 WP_039554872.1 DUF1338 domain-containing protein -
  BJE04_RS14705 (VV3052) astD 3127958..3129415 (-) 1458 WP_039554875.1 succinylglutamate-semialdehyde dehydrogenase -
  BJE04_RS14710 (VV3053) astA 3129433..3130452 (-) 1020 WP_011079294.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=23158 BJE04_RS14695 WP_011079297.1 3126111..3126743(+) (crp) [Vibrio vulnificus YJ016]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=23158 BJE04_RS14695 WP_011079297.1 3126111..3126743(+) (crp) [Vibrio vulnificus YJ016]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTCATTCATGCGGGCGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTTGCGGTACTGATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTCGAAGAAGGT
CAAGAGCGTACCGCATGGGTTCGTGCAAAATCACCTTGTGAAGTCGCAGAAATCTCATTCAAGAAATTCCGTCAGCTCAT
TCAGGTCAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTGACCAGCCAAAAAGTGGGTG
ACTTAGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTGGCGAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAGAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment