Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BJE04_RS14190 Genome accession   NC_005139
Coordinates   3019881..3020528 (+) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus YJ016     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014881..3025528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS14175 (VV2950) - 3015419..3016879 (-) 1461 WP_011151252.1 MSHA biogenesis protein MshI -
  BJE04_RS14180 (VV2952) csrD 3016892..3018889 (-) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  BJE04_RS14185 (VV2953) ssb 3019042..3019581 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  BJE04_RS14190 (VV2954) qstR 3019881..3020528 (+) 648 WP_011079388.1 response regulator transcription factor Regulator
  BJE04_RS14195 (VV2955) galU 3020714..3021586 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BJE04_RS14200 (VV2956) uvrA 3021728..3024550 (+) 2823 WP_043877332.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=23151 BJE04_RS14190 WP_011079388.1 3019881..3020528(+) (qstR) [Vibrio vulnificus YJ016]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=23151 BJE04_RS14190 WP_011079388.1 3019881..3020528(+) (qstR) [Vibrio vulnificus YJ016]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACTGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment