Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S101441_RS13165 Genome accession   NZ_CP021507
Coordinates   2462829..2463164 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain SRCM101441     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2457829..2468164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101441_RS13145 (S101441_02650) gcvT 2458422..2459510 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  S101441_RS13150 (S101441_02651) hepAA 2459951..2461624 (+) 1674 WP_038829735.1 SNF2-related protein -
  S101441_RS13155 (S101441_02652) yqhG 2461645..2462439 (+) 795 WP_014480249.1 YqhG family protein -
  S101441_RS13160 (S101441_02653) sinI 2462622..2462795 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  S101441_RS13165 (S101441_02654) sinR 2462829..2463164 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  S101441_RS13170 (S101441_02655) tasA 2463257..2464042 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  S101441_RS13175 (S101441_02656) sipW 2464106..2464678 (-) 573 WP_003230181.1 signal peptidase I SipW -
  S101441_RS13180 (S101441_02657) tapA 2464662..2465423 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  S101441_RS13185 (S101441_02658) yqzG 2465695..2466021 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  S101441_RS13190 (S101441_02659) spoIITA 2466063..2466242 (-) 180 WP_014480252.1 YqzE family protein -
  S101441_RS13195 (S101441_02660) comGG 2466313..2466687 (-) 375 WP_069837632.1 ComG operon protein ComGG Machinery gene
  S101441_RS13200 (S101441_02661) comGF 2466688..2467071 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  S101441_RS13205 (S101441_02662) comGE 2467097..2467444 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  S101441_RS13210 (S101441_02663) comGD 2467428..2467859 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  S101441_RS13215 (S101441_02664) comGC 2467849..2468145 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=231474 S101441_RS13165 WP_003226345.1 2462829..2463164(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM101441]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=231474 S101441_RS13165 WP_003226345.1 2462829..2463164(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM101441]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment