Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   S101267_RS19295 Genome accession   NZ_CP021505
Coordinates   3698388..3698507 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain SRCM101267     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3693388..3703507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101267_RS19270 (S101267_03870) - 3694589..3695017 (-) 429 WP_013353951.1 DUF1934 domain-containing protein -
  S101267_RS22045 - 3695171..3695630 (+) 460 Protein_3742 bacteriocin biosynthesis protein AlbG -
  S101267_RS19280 (S101267_03872) - 3695636..3697030 (-) 1395 WP_014471165.1 YncE family protein -
  S101267_RS19290 (S101267_03873) rapF 3697259..3698404 (+) 1146 WP_013353955.1 tetratricopeptide repeat protein Regulator
  S101267_RS19295 (S101267_03874) phrF 3698388..3698507 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  S101267_RS19300 (S101267_03875) speB 3698621..3699493 (-) 873 WP_013353956.1 agmatinase -
  S101267_RS19305 (S101267_03876) speE 3699552..3700382 (-) 831 WP_013353957.1 spermidine synthase -
  S101267_RS19310 (S101267_03877) - 3700582..3702654 (+) 2073 WP_013353958.1 transglycosylase domain-containing protein -
  S101267_RS19315 (S101267_03878) - 3702679..3703110 (-) 432 WP_013353959.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=231431 S101267_RS19295 WP_014471166.1 3698388..3698507(+) (phrF) [Bacillus amyloliquefaciens strain SRCM101267]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=231431 S101267_RS19295 WP_014471166.1 3698388..3698507(+) (phrF) [Bacillus amyloliquefaciens strain SRCM101267]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment