Detailed information NTG0231430

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: S101267_RS19290
• Genome accession: NZ_CP021505
• Coordinates: 3697259..3698404 (+)
• Length: 381 a.a.
• NCBI ID: WP_013353955.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM101267
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3692259..3703404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101267_RS19265 (S101267_03869)	argS	3692922..3694592 (-)	1671	WP_013353950.1	arginine--tRNA ligase	-
S101267_RS19270 (S101267_03870)	-	3694589..3695017 (-)	429	WP_013353951.1	DUF1934 domain-containing protein	-
S101267_RS22045	-	3695171..3695630 (+)	460	Protein_3742	bacteriocin biosynthesis protein AlbG	-
S101267_RS19280 (S101267_03872)	-	3695636..3697030 (-)	1395	WP_014471165.1	YncE family protein	-
S101267_RS19290 (S101267_03873)	rapF	3697259..3698404 (+)	1146	WP_013353955.1	tetratricopeptide repeat protein	Regulator
S101267_RS19295 (S101267_03874)	phrF	3698388..3698507 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
S101267_RS19300 (S101267_03875)	speB	3698621..3699493 (-)	873	WP_013353956.1	agmatinase	-
S101267_RS19305 (S101267_03876)	speE	3699552..3700382 (-)	831	WP_013353957.1	spermidine synthase	-
S101267_RS19310 (S101267_03877)	-	3700582..3702654 (+)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
S101267_RS19315 (S101267_03878)	-	3702679..3703110 (-)	432	WP_013353959.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45480.54 Da
• Isoelectric Point: 4.6393

>NTDB_id=231430 S101267_RS19290 WP_013353955.1 3697259..3698404(+) (rapF) [Bacillus amyloliquefaciens strain SRCM101267]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=231430 S101267_RS19290 WP_013353955.1 3697259..3698404(+) (rapF) [Bacillus amyloliquefaciens strain SRCM101267]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567