Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   S101359_RS17740 Genome accession   NZ_CP021500
Coordinates   3574889..3575578 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain SRCM101359     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569889..3580578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS17705 (S101359_03502) - 3570068..3570550 (-) 483 WP_088118069.1 flagellar protein FlgN -
  S101359_RS17710 (S101359_03503) flgM 3570566..3570826 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101359_RS17715 (S101359_03504) - 3570906..3571325 (-) 420 WP_010790082.1 TIGR03826 family flagellar region protein -
  S101359_RS17720 comFC 3571397..3572086 (-) 690 WP_279626854.1 double zinc ribbon domain-containing protein Machinery gene
  S101359_RS17725 (S101359_03506) - 3572083..3572379 (-) 297 WP_003326719.1 competence protein ComFB -
  S101359_RS17730 (S101359_03507) comFA 3572436..3573833 (-) 1398 WP_088118071.1 ATP-dependent helicase ComFA Machinery gene
  S101359_RS17735 (S101359_03508) - 3573940..3574782 (-) 843 WP_003326716.1 DegV family protein -
  S101359_RS17740 (S101359_03509) degU 3574889..3575578 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S101359_RS17745 (S101359_03510) degS 3575655..3576818 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  S101359_RS17750 (S101359_03511) - 3577036..3577689 (+) 654 WP_003326713.1 YigZ family protein -
  S101359_RS17755 (S101359_03512) - 3577689..3578912 (+) 1224 WP_088118072.1 LCP family protein -
  S101359_RS17760 (S101359_03513) - 3579004..3580080 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=231322 S101359_RS17740 WP_003219701.1 3574889..3575578(-) (degU) [Bacillus atrophaeus strain SRCM101359]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=231322 S101359_RS17740 WP_003219701.1 3574889..3575578(-) (degU) [Bacillus atrophaeus strain SRCM101359]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGATGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGCAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment