Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   S101359_RS17730 Genome accession   NZ_CP021500
Coordinates   3572436..3573833 (-) Length   465 a.a.
NCBI ID   WP_088118071.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567436..3578833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS17695 (S101359_03500) flgL 3567620..3568516 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  S101359_RS17700 (S101359_03501) flgK 3568528..3570051 (-) 1524 WP_088118068.1 flagellar hook-associated protein FlgK -
  S101359_RS17705 (S101359_03502) - 3570068..3570550 (-) 483 WP_088118069.1 flagellar protein FlgN -
  S101359_RS17710 (S101359_03503) flgM 3570566..3570826 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101359_RS17715 (S101359_03504) - 3570906..3571325 (-) 420 WP_010790082.1 TIGR03826 family flagellar region protein -
  S101359_RS17720 comFC 3571397..3572086 (-) 690 WP_279626854.1 double zinc ribbon domain-containing protein Machinery gene
  S101359_RS17725 (S101359_03506) - 3572083..3572379 (-) 297 WP_003326719.1 competence protein ComFB -
  S101359_RS17730 (S101359_03507) comFA 3572436..3573833 (-) 1398 WP_088118071.1 ATP-dependent helicase ComFA Machinery gene
  S101359_RS17735 (S101359_03508) - 3573940..3574782 (-) 843 WP_003326716.1 DegV family protein -
  S101359_RS17740 (S101359_03509) degU 3574889..3575578 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  S101359_RS17745 (S101359_03510) degS 3575655..3576818 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  S101359_RS17750 (S101359_03511) - 3577036..3577689 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53094.70 Da        Isoelectric Point: 10.1073

>NTDB_id=231321 S101359_RS17730 WP_088118071.1 3572436..3573833(-) (comFA) [Bacillus atrophaeus strain SRCM101359]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKISALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIVIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLNSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHIKEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=231321 S101359_RS17730 WP_088118071.1 3572436..3573833(-) (comFA) [Bacillus atrophaeus strain SRCM101359]
ATGCAGACTGAGTTGAAAAAGAAGCCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCCGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGATCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCCTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCGTCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAACTCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTTGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGACATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAAAGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(326-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.559

100

0.766

Multiple sequence alignment