Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   S101359_RS15820 Genome accession   NZ_CP021500
Coordinates   3190019..3190660 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185019..3195660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS15785 (S101359_03116) - 3186212..3186643 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  S101359_RS15790 (S101359_03117) - 3186643..3186984 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  S101359_RS15795 (S101359_03118) - 3186977..3188458 (+) 1482 WP_088117873.1 Na+/H+ antiporter subunit D -
  S101359_RS15800 (S101359_03119) - 3188464..3188940 (+) 477 WP_088117874.1 Na+/H+ antiporter subunit E -
  S101359_RS15805 (S101359_03120) - 3188940..3189224 (+) 285 WP_061570549.1 Na(+)/H(+) antiporter subunit F1 -
  S101359_RS15810 (S101359_03121) mnhG 3189208..3189582 (+) 375 WP_088117875.1 monovalent cation/H(+) antiporter subunit G -
  S101359_RS15815 (S101359_03122) - 3189621..3190001 (-) 381 WP_088117876.1 hotdog fold thioesterase -
  S101359_RS15820 (S101359_03123) comA 3190019..3190660 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  S101359_RS15825 (S101359_03124) comP 3190741..3193035 (-) 2295 WP_088117877.1 histidine kinase Regulator
  S101359_RS15830 (S101359_03125) comX 3193043..3193204 (-) 162 WP_010789788.1 competence pheromone ComX -
  S101359_RS15835 (S101359_03126) - 3193220..3194080 (-) 861 WP_088118513.1 polyprenyl synthetase family protein -
  S101359_RS15840 (S101359_03127) degQ 3194264..3194407 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  S101359_RS15845 (S101359_03128) - 3194867..3195226 (+) 360 WP_088117878.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=231315 S101359_RS15820 WP_003327154.1 3190019..3190660(-) (comA) [Bacillus atrophaeus strain SRCM101359]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=231315 S101359_RS15820 WP_003327154.1 3190019..3190660(-) (comA) [Bacillus atrophaeus strain SRCM101359]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATATTAAAAGAGAATCCTCTCTGCAAAATCATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCGGGGCTGCACGGCGCGATCAGCAAAACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATCTTAGTGGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCACAAAATGATCAAGATGTTCTGACGCCAAGAGAATGCCTCATT
CTTCAAGAGGTGGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGCAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAATGTTGGTTCCCGGACGGAAGCGGTGCTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901

Multiple sequence alignment