Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   S101359_RS02165 Genome accession   NZ_CP021500
Coordinates   441321..442271 (+) Length   316 a.a.
NCBI ID   WP_010789705.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436321..447271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS02140 (S101359_00421) rapC 437614..438762 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  S101359_RS02145 (S101359_00422) phrC 438746..438865 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  S101359_RS02150 - 438999..439106 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  S101359_RS02155 - 439310..439417 (-) 108 WP_035192051.1 YjcZ family sporulation protein -
  S101359_RS02160 (S101359_00423) - 439524..440888 (-) 1365 WP_088116506.1 aspartate kinase -
  S101359_RS02165 (S101359_00424) ceuB 441321..442271 (+) 951 WP_010789705.1 ABC transporter permease Machinery gene
  S101359_RS02170 (S101359_00425) - 442264..443211 (+) 948 WP_010789704.1 iron chelate uptake ABC transporter family permease subunit -
  S101359_RS02175 (S101359_00426) - 443205..443963 (+) 759 WP_063638742.1 ABC transporter ATP-binding protein -
  S101359_RS02180 (S101359_00427) - 443985..444938 (+) 954 WP_088116507.1 siderophore ABC transporter substrate-binding protein -
  S101359_RS02185 (S101359_00428) - 445236..446654 (-) 1419 WP_088116508.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34967.50 Da        Isoelectric Point: 9.8731

>NTDB_id=231264 S101359_RS02165 WP_010789705.1 441321..442271(+) (ceuB) [Bacillus atrophaeus strain SRCM101359]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGIIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=231264 S101359_RS02165 WP_010789705.1 441321..442271(+) (ceuB) [Bacillus atrophaeus strain SRCM101359]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCTTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCCTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTGATAATCGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCCGTCAACCTTGGCC
TGAAATATAAACGGATTGTGAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTAATCATTCCGAATATCGTATCCATTTACAGGGGAGACAACCTGAAAAGCAGCCTGCCCCACAC
AGCTCTTTTAGGTGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATCATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTATATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment