Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CXB56_RS05460 Genome accession   NZ_CP027205
Coordinates   454103..454735 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain WCHEC025943     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 449103..459735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB56_RS05435 (CXB56_05520) yhfG 449235..449402 (+) 168 WP_000736860.1 YhfG family protein -
  CXB56_RS05440 (CXB56_05525) fic 449392..449994 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CXB56_RS05445 (CXB56_05530) pabA 450026..450589 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CXB56_RS05450 (CXB56_05535) argD 450675..451895 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CXB56_RS05455 (CXB56_05540) yhfK 451962..454052 (-) 2091 WP_001356225.1 YccS/YhfK family putative transporter -
  CXB56_RS05460 (CXB56_05545) crp 454103..454735 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CXB56_RS05470 (CXB56_05555) yhfA 455037..455441 (+) 405 WP_001148908.1 OsmC family protein -
  CXB56_RS05475 (CXB56_05560) prkB 455496..456365 (-) 870 WP_001274680.1 phosphoribulokinase -
  CXB56_RS05480 (CXB56_05565) yheU 456419..456637 (-) 219 WP_000907085.1 YheU family protein -
  CXB56_RS05485 (CXB56_05570) yheT 456631..457653 (-) 1023 WP_000057380.1 hydrolase -
  CXB56_RS05490 (CXB56_05575) yheS 457653..459566 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=231233 CXB56_RS05460 WP_000242755.1 454103..454735(-) (crp) [Escherichia coli strain WCHEC025943]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=231233 CXB56_RS05460 WP_000242755.1 454103..454735(-) (crp) [Escherichia coli strain WCHEC025943]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467