Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S101444_RS12705 Genome accession   NZ_CP021498
Coordinates   2368913..2369248 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis strain SRCM101444     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2363913..2374248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101444_RS12685 (S101444_02524) gcvT 2364505..2365593 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  S101444_RS12690 (S101444_02525) hepAA 2366035..2367708 (+) 1674 WP_014480248.1 SNF2-related protein -
  S101444_RS12695 (S101444_02526) yqhG 2367729..2368523 (+) 795 WP_014480249.1 YqhG family protein -
  S101444_RS12700 (S101444_02527) sinI 2368706..2368879 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  S101444_RS12705 (S101444_02528) sinR 2368913..2369248 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  S101444_RS12710 (S101444_02529) tasA 2369341..2370126 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  S101444_RS12715 (S101444_02530) sipW 2370190..2370762 (-) 573 WP_003230181.1 signal peptidase I SipW -
  S101444_RS12720 (S101444_02531) tapA 2370746..2371507 (-) 762 WP_087614619.1 amyloid fiber anchoring/assembly protein TapA -
  S101444_RS12725 (S101444_02532) yqzG 2371779..2372105 (+) 327 WP_029317915.1 YqzG/YhdC family protein -
  S101444_RS12730 (S101444_02533) spoIITA 2372147..2372326 (-) 180 WP_014480252.1 YqzE family protein -
  S101444_RS12735 (S101444_02534) comGG 2372397..2372771 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  S101444_RS12740 (S101444_02535) comGF 2372772..2373155 (-) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  S101444_RS12745 (S101444_02536) comGE 2373181..2373528 (-) 348 WP_087614620.1 ComG operon protein 5 Machinery gene
  S101444_RS12750 (S101444_02537) comGD 2373512..2373943 (-) 432 WP_080529538.1 comG operon protein ComGD Machinery gene
  S101444_RS12755 (S101444_02538) comGC 2373933..2374229 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=231135 S101444_RS12705 WP_003226345.1 2368913..2369248(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM101444]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=231135 S101444_RS12705 WP_003226345.1 2368913..2369248(+) (sinR) [Bacillus subtilis subsp. subtilis strain SRCM101444]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment