Detailed information NTG0231087

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAGQ_RS17840
• Genome accession: NZ_CP021495
• Coordinates: 3581877..3583022 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain GQJK49
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576877..3588022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAGQ_RS17815 (BAGQ_3778)	-	3577774..3578202 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
BAGQ_RS17820 (BAGQ_3779)	-	3578356..3578868 (+)	513	Protein_3427	bacteriocin biosynthesis protein AlbG	-
BAGQ_RS17825 (BAGQ_3780)	-	3578875..3580251 (-)	1377	WP_032875890.1	YncE family protein	-
BAGQ_RS17830 (BAGQ_3781)	-	3580291..3581646 (-)	1356	WP_032875887.1	YncE family protein	-
BAGQ_RS17840 (BAGQ_3782)	rapF	3581877..3583022 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
BAGQ_RS19720	-	3583006..3583125 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BAGQ_RS17845 (BAGQ_3783)	speB	3583248..3584120 (-)	873	WP_032875884.1	agmatinase	-
BAGQ_RS17850 (BAGQ_3784)	speE	3584179..3585009 (-)	831	WP_003151052.1	spermidine synthase	-
BAGQ_RS17855 (BAGQ_3785)	-	3585209..3587281 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
BAGQ_RS17860	-	3587306..3587739 (-)	434	Protein_3435	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=231087 BAGQ_RS17840 WP_074534220.1 3581877..3583022(+) (rapF) [Bacillus velezensis strain GQJK49]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=231087 BAGQ_RS17840 WP_074534220.1 3581877..3583022(+) (rapF) [Bacillus velezensis strain GQJK49]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541