Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   GBS_RS10120 Genome accession   NC_004368
Coordinates   2017830..2018129 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae NEM316     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2012830..2023129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS10095 (gbs1938) - 2013255..2013746 (-) 492 WP_000632643.1 PTS sugar transporter subunit IIB -
  GBS_RS10100 (gbs1939) - 2013764..2014189 (-) 426 WP_000823120.1 PTS mannose transporter subunit IIA -
  GBS_RS10105 (gbs1940) - 2014436..2015470 (-) 1035 WP_000369171.1 acyltransferase family protein -
  GBS_RS10110 (gbs1941) - 2015699..2016853 (-) 1155 WP_000623418.1 ABC transporter permease subunit -
  GBS_RS10115 (gbs1942) - 2016859..2017707 (-) 849 WP_000926588.1 ABC transporter ATP-binding protein -
  GBS_RS10120 (gbs1943) comD/comD2 2017830..2018129 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  GBS_RS10125 (gbs1944) comE/blpR 2018198..2018950 (-) 753 WP_001019932.1 response regulator transcription factor Regulator
  GBS_RS10130 (gbs1945) - 2019227..2020042 (-) 816 WP_001029868.1 endonuclease/exonuclease/phosphatase family protein -
  GBS_RS10135 (gbs1946) - 2020096..2022279 (-) 2184 WP_000795063.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=23102 GBS_RS10120 WP_000002567.1 2017830..2018129(-) (comD/comD2) [Streptococcus agalactiae NEM316]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=23102 GBS_RS10120 WP_000002567.1 2017830..2018129(-) (comD/comD2) [Streptococcus agalactiae NEM316]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGTTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364

Multiple sequence alignment