Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   GBS_RS09415 Genome accession   NC_004368
Coordinates   1866854..1867363 (-) Length   169 a.a.
NCBI ID   WP_000392201.1    Uniprot ID   -
Organism   Streptococcus agalactiae NEM316     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1861854..1872363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS09390 (gbs1800) tsaD 1862363..1863373 (-) 1011 WP_000655092.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GBS_RS09395 (gbs1801) rimI 1863449..1863856 (-) 408 WP_000445944.1 ribosomal protein S18-alanine N-acetyltransferase -
  GBS_RS09400 (gbs1802) tsaB 1863858..1864550 (-) 693 WP_000978603.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  GBS_RS09405 (gbs1803) - 1864729..1864959 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  GBS_RS09410 (gbs1804) rnjA 1865013..1866692 (+) 1680 WP_000065499.1 ribonuclease J1 -
  GBS_RS09415 (gbs1805) lytF 1866854..1867363 (-) 510 WP_000392201.1 CHAP domain-containing protein Regulator
  GBS_RS09420 (gbs1806) glnA 1867511..1868857 (-) 1347 WP_000156223.1 type I glutamate--ammonia ligase -
  GBS_RS09425 (gbs1807) - 1868891..1869262 (-) 372 WP_000664341.1 MerR family transcriptional regulator -
  GBS_RS09430 (gbs1808) - 1869342..1869881 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  GBS_RS09435 (gbs1809) - 1870144..1871340 (-) 1197 WP_001096752.1 phosphoglycerate kinase -
  GBS_RS09440 (gbs1810) - 1871475..1872344 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18304.21 Da        Isoelectric Point: 4.4055

>NTDB_id=23098 GBS_RS09415 WP_000392201.1 1866854..1867363(-) (lytF) [Streptococcus agalactiae NEM316]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=23098 GBS_RS09415 WP_000392201.1 1866854..1867363(-) (lytF) [Streptococcus agalactiae NEM316]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGCGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414