Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WS_RS08845 Genome accession   NC_005090
Coordinates   1776463..1777242 (+) Length   259 a.a.
NCBI ID   WP_011139676.1    Uniprot ID   Q7MQZ2
Organism   Wolinella succinogenes DSM 1740     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1771463..1782242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS_RS08825 (WS1879) minD 1772023..1772829 (+) 807 WP_011139672.1 septum site-determining protein MinD -
  WS_RS08830 (WS1880) minE 1772826..1773068 (+) 243 WP_011139673.1 cell division topological specificity factor MinE -
  WS_RS08835 (WS1881) - 1773072..1774214 (+) 1143 WP_049770681.1 divergent polysaccharide deacetylase family protein -
  WS_RS08840 (WS1882) - 1774337..1776466 (+) 2130 WP_011139675.1 WD40 repeat domain-containing protein -
  WS_RS08845 (WS1883) dprA 1776463..1777242 (+) 780 WP_011139676.1 DNA processing protein DprA Machinery gene
  WS_RS08850 (WS1884) dprB 1777239..1777622 (+) 384 WP_011139677.1 Holliday junction resolvase RuvX Machinery gene
  WS_RS08855 (WS1885) purH 1777681..1779213 (+) 1533 WP_011139678.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  WS_RS08860 (WS1886) hemL 1779225..1780520 (+) 1296 WP_011139679.1 glutamate-1-semialdehyde 2,1-aminomutase -
  WS_RS08865 (WS1887) - 1780513..1780809 (+) 297 WP_041571895.1 AtpZ/AtpI family protein -
  WS_RS08870 (WS1888) - 1780806..1781348 (+) 543 WP_011139681.1 hypothetical protein -
  WS_RS08875 (WS1889) - 1781354..1782043 (-) 690 WP_011139682.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.19 Da        Isoelectric Point: 9.6848

>NTDB_id=23085 WS_RS08845 WP_011139676.1 1776463..1777242(+) (dprA) [Wolinella succinogenes DSM 1740]
MILPLPSLPPELLLLPSPPKALFYHGDLSLLKRPKVAIVGTRHPNAYTKAMTRELARFWSERGVVVVSGGAFGVDVLAHE
AAFPSTILISPSSLDLPYPPSHKPIIERIAKEGLLLSEYESSFMPKRYTFLERNRLIIALSSLIIIPQADLKSGSMQSAH
TAIKLGKPLYVLPHRLKESLGTQSLLERELALPLYNPQTLLERHFPELAKPLKKSKDDLLLYAQTLPSYEEAVARFGERI
FEYELEGKILIKEGRIMPL

Nucleotide


Download         Length: 780 bp        

>NTDB_id=23085 WS_RS08845 WP_011139676.1 1776463..1777242(+) (dprA) [Wolinella succinogenes DSM 1740]
ATGATTCTCCCTCTTCCCTCCCTCCCTCCAGAGCTTCTCCTTCTCCCCTCTCCGCCCAAAGCTCTCTTTTATCATGGAGA
CCTTTCACTTCTAAAGCGCCCCAAGGTGGCTATCGTAGGCACGCGCCACCCCAATGCTTACACCAAAGCCATGACGCGCG
AGTTGGCACGATTTTGGAGCGAGAGAGGTGTGGTGGTCGTGAGTGGAGGGGCTTTTGGAGTTGATGTTTTGGCGCACGAG
GCGGCCTTCCCCTCAACGATTCTCATCTCTCCCTCCAGCCTAGACCTCCCCTACCCTCCCTCACACAAGCCTATAATCGA
AAGAATCGCTAAAGAGGGGCTACTGCTTAGCGAATACGAATCCTCTTTTATGCCCAAGCGCTACACCTTTTTAGAGCGAA
ATCGCCTCATCATCGCTCTCTCCAGCCTCATCATCATCCCTCAAGCCGATTTAAAAAGCGGCTCCATGCAGAGCGCCCAC
ACCGCCATCAAGCTTGGCAAACCCCTCTATGTCCTTCCCCATCGGCTCAAAGAGAGCCTAGGCACCCAATCCCTCCTAGA
AAGAGAGCTAGCCCTGCCTCTCTATAACCCTCAAACCCTCTTAGAGCGCCACTTTCCAGAGCTAGCCAAGCCCCTTAAAA
AGAGCAAAGATGATCTCCTCCTCTATGCTCAAACCCTGCCAAGCTACGAGGAGGCGGTGGCGCGCTTTGGAGAGCGAATC
TTTGAATATGAGCTAGAGGGAAAGATTCTCATCAAAGAGGGGAGGATCATGCCCCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MQZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

50.607

95.367

0.483
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.415

88.417

0.402

Multiple sequence alignment