Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WS_RS08850 Genome accession   NC_005090
Coordinates   1777239..1777622 (+) Length   127 a.a.
NCBI ID   WP_011139677.1    Uniprot ID   Q7MQZ1
Organism   Wolinella succinogenes DSM 1740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772239..1782622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WS_RS08830 (WS1880) minE 1772826..1773068 (+) 243 WP_011139673.1 cell division topological specificity factor MinE -
  WS_RS08835 (WS1881) - 1773072..1774214 (+) 1143 WP_049770681.1 divergent polysaccharide deacetylase family protein -
  WS_RS08840 (WS1882) - 1774337..1776466 (+) 2130 WP_011139675.1 WD40 repeat domain-containing protein -
  WS_RS08845 (WS1883) dprA 1776463..1777242 (+) 780 WP_011139676.1 DNA processing protein DprA Machinery gene
  WS_RS08850 (WS1884) dprB 1777239..1777622 (+) 384 WP_011139677.1 Holliday junction resolvase RuvX Machinery gene
  WS_RS08855 (WS1885) purH 1777681..1779213 (+) 1533 WP_011139678.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  WS_RS08860 (WS1886) hemL 1779225..1780520 (+) 1296 WP_011139679.1 glutamate-1-semialdehyde 2,1-aminomutase -
  WS_RS08865 (WS1887) - 1780513..1780809 (+) 297 WP_041571895.1 AtpZ/AtpI family protein -
  WS_RS08870 (WS1888) - 1780806..1781348 (+) 543 WP_011139681.1 hypothetical protein -
  WS_RS08875 (WS1889) - 1781354..1782043 (-) 690 WP_011139682.1 hypothetical protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14221.51 Da        Isoelectric Point: 9.5462

>NTDB_id=23086 WS_RS08850 WP_011139677.1 1777239..1777622(+) (dprB) [Wolinella succinogenes DSM 1740]
MIIAVDIGLKRLGVAQYAAGVALPLDPILRKNRHQAARDLDLLLKEKGAQKLVAGIPKEGSSSEEMERRIRHFIGLLEFR
GEVCFVDESYSSKEAFELLRGRSRDRRDGKLDSLSALVILERYLGSL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=23086 WS_RS08850 WP_011139677.1 1777239..1777622(+) (dprB) [Wolinella succinogenes DSM 1740]
ATGATTATTGCTGTGGATATTGGCCTAAAGCGCCTAGGGGTCGCCCAATATGCTGCGGGAGTGGCACTCCCCCTCGACCC
TATCTTGCGTAAAAATCGCCATCAAGCTGCACGCGACCTTGATCTCCTCCTTAAAGAAAAGGGGGCGCAAAAGCTGGTGG
CGGGAATCCCCAAAGAGGGCAGTAGCAGCGAGGAGATGGAGCGAAGAATTCGCCATTTCATTGGACTGCTAGAGTTTAGA
GGGGAAGTCTGCTTTGTAGATGAATCCTATAGCTCCAAAGAGGCTTTTGAGCTCCTTAGGGGGCGGAGTAGAGATCGGCG
TGATGGGAAGCTTGATTCTCTTAGCGCCCTTGTGATTTTGGAGCGATATTTAGGCTCTCTCTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.125

100

0.535

Multiple sequence alignment