Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GBS_RS07375 Genome accession   NC_004368
Coordinates   1451279..1451719 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae NEM316     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446279..1456719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS07360 (gbs1399) - 1446937..1447563 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  GBS_RS07365 (gbs1400) rcrQ 1447671..1449425 (-) 1755 WP_000851084.1 ABC transporter ATP-binding protein Regulator
  GBS_RS07370 (gbs1401) rcrP 1449415..1451232 (-) 1818 WP_000481820.1 ABC transporter ATP-binding protein Regulator
  GBS_RS07375 (gbs1402) rcrR 1451279..1451719 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GBS_RS07380 (gbs1403) - 1451988..1454060 (+) 2073 WP_000726911.1 bifunctional metallophosphatase/5'-nucleotidase -
  GBS_RS07385 (gbs1404) - 1454097..1454507 (-) 411 WP_000594936.1 peptide deformylase -
  GBS_RS07390 (gbs1405) gdhA 1454577..1455926 (-) 1350 WP_000200446.1 NADP-specific glutamate dehydrogenase -
  GBS_RS07395 (gbs1406) - 1456094..1456603 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=23084 GBS_RS07375 WP_000431168.1 1451279..1451719(-) (rcrR) [Streptococcus agalactiae NEM316]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=23084 GBS_RS07375 WP_000431168.1 1451279..1451719(-) (rcrR) [Streptococcus agalactiae NEM316]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411

Multiple sequence alignment