Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CCK83_RS09710 Genome accession   NZ_CP021428
Coordinates   2035881..2036285 (+) Length   134 a.a.
NCBI ID   WP_017482386.1    Uniprot ID   A0A9X3TDF7
Organism   Acinetobacter pittii strain HUMV-6483     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030881..2041285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCK83_RS09695 relA 2031867..2034173 (+) 2307 WP_017482389.1 RelA/SpoT family protein -
  CCK83_RS09700 - 2034220..2034993 (-) 774 WP_017482388.1 SDR family oxidoreductase -
  CCK83_RS09705 mazG 2035106..2035912 (+) 807 WP_017482387.1 nucleoside triphosphate pyrophosphohydrolase -
  CCK83_RS09710 comEA 2035881..2036285 (+) 405 WP_017482386.1 ComEA family DNA-binding protein Machinery gene
  CCK83_RS09715 pcnB 2036411..2037874 (+) 1464 WP_017482385.1 polynucleotide adenylyltransferase PcnB -
  CCK83_RS09720 folK 2037871..2038353 (+) 483 WP_017482384.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CCK83_RS09725 panB 2038399..2039208 (+) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CCK83_RS09730 panC 2039212..2040060 (+) 849 WP_017482383.1 pantoate--beta-alanine ligase -
  CCK83_RS09735 rapZ 2040084..2040935 (+) 852 WP_005066272.1 RNase adapter RapZ -
  CCK83_RS09740 - 2040932..2041201 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15483.75 Da        Isoelectric Point: 10.4871

>NTDB_id=230684 CCK83_RS09710 WP_017482386.1 2035881..2036285(+) (comEA) [Acinetobacter pittii strain HUMV-6483]
MQFSMNLWKNKHNIFIILFWSVISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGLAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=230684 CCK83_RS09710 WP_017482386.1 2035881..2036285(+) (comEA) [Acinetobacter pittii strain HUMV-6483]
ATGCAATTCAGCATGAATCTTTGGAAAAATAAGCACAATATTTTCATTATTTTATTTTGGAGCGTGATTTCATCAACTTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCATCAGGACAAATTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAGAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCTAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.073

100

0.716
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

41.129

92.537

0.381

Multiple sequence alignment