Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OLMES_RS04095 Genome accession   NZ_CP021425
Coordinates   908788..910164 (-) Length   458 a.a.
NCBI ID   WP_087460086.1    Uniprot ID   A0A1Y0I391
Organism   Oleiphilus messinensis strain ME102     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 903788..915164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLMES_RS04065 (OLMES_0829) - 904015..904761 (-) 747 WP_087460081.1 PilX N-terminal domain-containing pilus assembly protein -
  OLMES_RS04070 (OLMES_0830) - 904767..905558 (-) 792 WP_087460082.1 PilW family protein -
  OLMES_RS04075 (OLMES_0831) pilV 905560..906471 (-) 912 WP_232465255.1 type IV pilus modification protein PilV -
  OLMES_RS04080 (OLMES_0832) - 906519..907082 (-) 564 WP_087460083.1 GspH/FimT family pseudopilin -
  OLMES_RS04090 (OLMES_0834) thiO 907656..908765 (+) 1110 WP_087460085.1 glycine oxidase ThiO -
  OLMES_RS04095 (OLMES_0835) pilR 908788..910164 (-) 1377 WP_087460086.1 sigma-54 dependent transcriptional regulator Regulator
  OLMES_RS04100 (OLMES_0836) - 910222..911796 (-) 1575 WP_232465256.1 PAS domain-containing sensor histidine kinase -
  OLMES_RS04105 (OLMES_0837) - 912108..912983 (-) 876 WP_087460088.1 outer membrane protein assembly factor BamD -
  OLMES_RS04110 (OLMES_0838) rluD 913211..914281 (+) 1071 WP_232465257.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 51137.19 Da        Isoelectric Point: 5.0282

>NTDB_id=230576 OLMES_RS04095 WP_087460086.1 908788..910164(-) (pilR) [Oleiphilus messinensis strain ME102]
MTNKSIQTALIVDDEPDIRDLLEITLTRMGINTYSASNLEEAYSHLSRTEFHLCLTDMNLPDGNGIDLVSNIQKNHPNIP
VAVITAYGSIETAIAALKAGAFDFVSKPVELSRLRDLVDSALRLSQQQENKESKVSDAQEDKLLLGNSETMQKLRGQIRK
LARSQAPVYISGESGSGKEMVARMIHQLGPRADAPFVPVNCGAIPNELMESEFFGHKKGSFTGAVENKLGLFQAADGGTL
FLDEVADLPMAMQVKLLRSIQEKTVRPVGEQKEIPVNVRILSATHKDLNNEIDEGRFRQDLFYRINVIELKVPALRERVE
DIPLLAETMLKRVADECDIPNARLSTDAINALKQYSFPGNVRELENIIERAFTLCEDDVIHAVDLHLQDNSSDARQTIDS
APAQQRNGVNLEEYLETIEKQTIEQALEETRWNKTAAAKKLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=230576 OLMES_RS04095 WP_087460086.1 908788..910164(-) (pilR) [Oleiphilus messinensis strain ME102]
ATGACCAATAAAAGTATTCAAACCGCACTGATCGTCGACGACGAGCCGGACATTCGAGACCTTTTGGAAATTACCTTGAC
CCGGATGGGGATCAATACTTACAGCGCATCAAATCTCGAAGAAGCCTACTCTCATCTAAGTCGCACCGAGTTTCATCTGT
GCTTGACCGATATGAATCTACCGGACGGCAACGGCATTGACTTGGTATCCAACATTCAAAAAAATCACCCCAATATTCCT
GTTGCCGTTATTACTGCATACGGCAGTATTGAAACAGCTATCGCCGCATTGAAAGCAGGCGCGTTCGATTTTGTTTCAAA
ACCCGTTGAACTCTCCCGACTGAGGGATTTAGTGGACAGCGCACTGCGCCTGAGTCAACAACAGGAGAACAAAGAGTCAA
AGGTTAGTGATGCCCAGGAAGATAAACTTCTGCTGGGTAACTCGGAAACCATGCAAAAACTCCGAGGCCAGATTCGCAAA
CTCGCCCGGAGCCAGGCCCCGGTATATATTAGCGGTGAATCAGGAAGCGGCAAAGAAATGGTTGCACGAATGATTCATCA
ACTCGGCCCACGGGCTGACGCACCGTTTGTACCGGTGAATTGCGGTGCAATCCCCAACGAACTCATGGAAAGCGAATTTT
TTGGCCATAAAAAAGGGAGCTTTACTGGCGCGGTGGAAAATAAACTTGGCCTGTTCCAGGCTGCTGATGGTGGTACGCTG
TTTCTCGATGAAGTGGCAGACCTGCCAATGGCAATGCAAGTCAAACTACTGCGTTCAATTCAAGAAAAAACCGTTCGTCC
CGTTGGTGAGCAGAAGGAAATTCCGGTCAATGTGCGAATTCTCAGTGCCACACACAAAGATCTTAATAACGAGATAGATG
AGGGTCGATTCCGCCAGGATCTGTTCTATCGCATCAACGTCATTGAACTCAAAGTACCCGCCTTGAGAGAGCGTGTGGAA
GACATTCCGTTATTGGCGGAAACGATGCTAAAACGGGTTGCAGATGAATGTGACATCCCTAATGCCCGGCTGAGCACAGA
TGCCATAAACGCACTCAAGCAATACTCGTTTCCGGGAAACGTCCGTGAGCTGGAAAATATCATTGAACGTGCTTTTACGC
TCTGTGAGGATGATGTCATTCATGCTGTTGACCTCCACCTTCAAGACAATTCAAGCGACGCCAGGCAAACCATTGACTCT
GCCCCGGCGCAACAACGAAATGGCGTAAATCTCGAAGAGTATCTGGAAACCATCGAGAAACAAACAATTGAGCAGGCGCT
GGAAGAAACGCGCTGGAACAAAACCGCCGCCGCGAAAAAACTGGGGATCAGTTTTCGCGCACTGCGGTATCGGTTGAAGA
AGTTGGGAATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-118)

Sigma-54 interaction domain (Sigma54_activat)

(144-310)

Bacterial regulatory protein, Fis family (HTH_8)

(415-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0I391

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

65.944

100

0.664
  pilR Acinetobacter baumannii strain A118

51.844

100

0.522
  luxO Vibrio cholerae strain A1552

38.789

97.38

0.378

Multiple sequence alignment