Detailed information NTG0023053

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CV_RS00315
• Genome accession: NC_005085
• Coordinates: 83600..84913 (-)
• Length: 437 a.a.
• NCBI ID: WP_011133628.1
• Uniprot ID: -
• Organism: Chromobacterium violaceum ATCC 12472
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 78600..89913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV_RS00305 (CV0069)	-	80118..81368 (-)	1251	WP_011133624.1	HlyD family secretion protein	-
CV_RS23740 (CV0071)	-	81884..82060 (+)	177	WP_011133626.1	hypothetical protein	-
CV_RS00310 (CV0072)	-	82163..83548 (+)	1386	WP_011133627.1	radical SAM/SPASM domain-containing protein	-
CV_RS00315 (CV0073)	pilR	83600..84913 (-)	1314	WP_011133628.1	sigma-54-dependent transcriptional regulator	Regulator
CV_RS00320 (CV0074)	-	84906..86462 (-)	1557	WP_011133629.1	two-component system sensor histidine kinase NtrB	-
CV_RS00325 (CV0075)	parC	86462..88813 (-)	2352	WP_011133630.1	DNA topoisomerase IV subunit A	-
CV_RS00330 (CV0076)	-	88912..89370 (+)	459	WP_011133631.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 437 a.a.
• Molecular weight: 47731.71 Da
• Isoelectric Point: 5.6281

>NTDB_id=23053 CV_RS00315 WP_011133628.1 83600..84913(-) (pilR) [Chromobacterium violaceum ATCC 12472]
MTKTLRVLIVDDEPDIRELLELTLLKMGLAPVCAGSVAEARSALDAGGFDLALTDMRLPDGEGLEVVNHIGESGLDVPIA
VITAYGSADNAVRAMKAGAFDYLQKPVSLAQLRSLVKTALKVETPVRAAVQQRLLGESPAIQEVLRLTDKLSRSQAAVYI
GGESGTGKEQAARLIHELGPRADKPFVAVNCGAIPESLMESEFFGCRKGAFTGADADRDGFFQQAQGGTLFLDEVAELPL
AMQVKLLRAIQEKTVRKLGASQEEAVDARIICATHRDLAARVESGQFRQDLYYRLNVLPLRMPPLRELRDDIPLFAERLL
QRFGGASAPQLSADARRALQDYAYPGNFRELENILERAVALAAGPALSREDLQLTPCAEHAPEPGSGEPLQDYLDRVERE
AIVKALEGTRYNRTQAAKKLGVTFRSLRYRMERLGVK

Nucleotide

• Length: 1314 bp

>NTDB_id=23053 CV_RS00315 WP_011133628.1 83600..84913(-) (pilR) [Chromobacterium violaceum ATCC 12472]
ATGACTAAGACACTGCGCGTATTGATCGTCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCTTGCTGAAAAT
GGGCCTCGCCCCGGTATGCGCCGGCAGCGTGGCCGAGGCGCGTTCCGCGCTGGACGCGGGCGGATTCGACCTGGCGCTGA
CCGATATGCGGCTGCCTGACGGCGAGGGCTTGGAGGTGGTCAACCACATCGGCGAGTCCGGGCTGGATGTGCCCATCGCC
GTGATCACCGCCTACGGCAGCGCCGACAACGCGGTGCGGGCGATGAAGGCTGGCGCTTTCGACTACTTGCAGAAGCCGGT
CAGCCTGGCCCAGCTGCGCAGCCTGGTGAAGACGGCGCTGAAGGTGGAAACGCCGGTCCGCGCCGCCGTCCAGCAGCGGC
TGCTGGGCGAGTCGCCGGCGATACAGGAAGTGCTGCGGCTGACGGACAAGCTGTCGCGCAGCCAGGCCGCGGTGTACATC
GGCGGGGAGTCCGGCACCGGCAAGGAACAGGCGGCGCGGCTGATCCACGAGCTGGGTCCGCGCGCCGACAAGCCCTTCGT
CGCCGTCAACTGCGGCGCGATCCCGGAAAGCCTGATGGAGAGCGAGTTCTTCGGCTGCCGCAAGGGCGCGTTCACCGGCG
CGGACGCCGACCGCGACGGCTTCTTCCAGCAGGCGCAGGGCGGCACCCTGTTCCTGGACGAAGTGGCCGAGCTGCCGCTG
GCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGACCGTGCGCAAGCTGGGTGCCAGCCAGGAAGAGGCGGTCGA
TGCCCGCATCATCTGCGCCACCCACCGCGATCTGGCGGCGCGGGTGGAGTCCGGGCAGTTCCGACAGGACCTGTACTACC
GCCTCAACGTGCTGCCGCTGAGAATGCCGCCGCTGCGCGAGCTGCGCGACGACATCCCGCTGTTCGCCGAGCGGCTGCTG
CAGCGCTTCGGCGGCGCGTCCGCGCCGCAGTTGTCCGCCGACGCCCGCCGCGCGCTGCAGGACTACGCCTACCCCGGCAA
TTTCCGCGAGCTGGAGAACATCCTGGAGCGGGCGGTGGCGCTGGCCGCCGGGCCCGCGCTGTCGCGCGAAGACCTGCAGC
TGACGCCCTGCGCCGAGCACGCGCCGGAGCCCGGCAGCGGCGAGCCGCTGCAGGACTACCTGGACCGCGTCGAGCGCGAG
GCCATCGTCAAGGCGCTGGAGGGCACCCGCTACAACCGCACCCAGGCCGCTAAGAAACTGGGGGTCACCTTCCGCTCGCT
GCGTTACCGGATGGAGCGGCTGGGCGTGAAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (394-433)

• Sigma-54 interaction domain (Sigma54_activat) (134-300)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.318	100	0.597
pilR	Acinetobacter baumannii strain A118	44.978	100	0.471
luxO	Vibrio cholerae strain A1552	39.952	95.652	0.382