Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   GBS_RS02205 Genome accession   NC_004368
Coordinates   384737..385777 (+) Length   346 a.a.
NCBI ID   WP_000732714.1    Uniprot ID   -
Organism   Streptococcus agalactiae NEM316     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 379737..390777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS02165 (gbs0353) tsaE 379813..380256 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GBS_RS02170 (gbs0354) - 380249..380770 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  GBS_RS02175 (gbs0355) brpA 380779..382086 (+) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  GBS_RS02180 - 382150..382446 (-) 297 WP_000690173.1 hypothetical protein -
  GBS_RS02185 (gbs0357) - 382443..382862 (-) 420 WP_000368097.1 HIT family protein -
  GBS_RS02190 - 383198..383701 (+) 504 WP_000773453.1 hypothetical protein -
  GBS_RS02195 - 383753..383938 (-) 186 WP_000368100.1 hypothetical protein -
  GBS_RS02200 (gbs0359) pptA 384010..384735 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  GBS_RS02205 (gbs0360) pptB 384737..385777 (+) 1041 WP_000732714.1 ABC transporter permease Regulator
  GBS_RS02210 (gbs0361) - 385870..386058 (+) 189 WP_001161739.1 hypothetical protein -
  GBS_RS02215 (gbs0362) - 386095..386589 (+) 495 WP_000620669.1 hypothetical protein -
  GBS_RS02220 (gbs0363) - 386600..386929 (+) 330 WP_000806219.1 hypothetical protein -
  GBS_RS02225 (gbs0366) - 387145..387372 (+) 228 WP_000368981.1 hypothetical protein -
  GBS_RS02230 (gbs0367) - 387385..388878 (+) 1494 WP_001091156.1 primase C-terminal domain-containing protein -
  GBS_RS02235 (gbs0369) - 389134..389337 (+) 204 WP_000878297.1 hypothetical protein -
  GBS_RS02240 (gbs0370) - 389364..389777 (+) 414 WP_000213918.1 hypothetical protein -
  GBS_RS02245 (gbs0371) - 389777..390223 (+) 447 WP_000565647.1 hypothetical protein -
  GBS_RS11910 - 390216..390416 (+) 201 WP_000609074.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40324.62 Da        Isoelectric Point: 10.5430

>NTDB_id=23037 GBS_RS02205 WP_000732714.1 384737..385777(+) (pptB) [Streptococcus agalactiae NEM316]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKVSGKSF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=23037 GBS_RS02205 WP_000732714.1 384737..385777(+) (pptB) [Streptococcus agalactiae NEM316]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAACGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTAATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAAGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGGTAAGTGGTAAGAGTTTTTA
G

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.941

98.266

0.471
  pptB Streptococcus salivarius strain HSISS4

47.647

98.266

0.468