Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | GBS_RS01090 | Genome accession | NC_004368 |
| Coordinates | 189781..190080 (+) | Length | 99 a.a. |
| NCBI ID | WP_001867089.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae NEM316 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 184781..195080
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBS_RS01070 (gbs0158) | - | 186649..187014 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| GBS_RS11090 | comGA | 187187..188158 (+) | 972 | WP_000250808.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GBS_RS01075 (gbs0160) | comGB | 188052..189095 (+) | 1044 | WP_223295592.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GBS_RS01080 (gbs0161) | comGC/cglC | 189092..189421 (+) | 330 | WP_000793380.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GBS_RS01085 (gbs0162) | comGD | 189396..189809 (+) | 414 | WP_000244259.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GBS_RS01090 (gbs0163) | comGE | 189781..190080 (+) | 300 | WP_001867089.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GBS_RS01095 (gbs0164) | comGF | 190034..190495 (+) | 462 | WP_001874060.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GBS_RS01100 (gbs0165) | comGG | 190473..190844 (+) | 372 | WP_000601104.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GBS_RS01105 (gbs0166) | comGH | 190959..191933 (+) | 975 | WP_001008570.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GBS_RS01110 (gbs0167) | - | 191965..193158 (+) | 1194 | WP_000047535.1 | acetate kinase | - |
| GBS_RS01115 (gbs0168) | - | 193309..193515 (+) | 207 | WP_000798242.1 | helix-turn-helix transcriptional regulator | - |
| GBS_RS11710 | - | 193574..193711 (+) | 138 | WP_001867090.1 | hypothetical protein | - |
| GBS_RS01120 (gbs0169) | - | 193752..194207 (+) | 456 | WP_000905674.1 | hypothetical protein | - |
| GBS_RS01125 (gbs0170) | - | 194276..194941 (+) | 666 | WP_000008111.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 11250.38 Da Isoelectric Point: 10.6118
>NTDB_id=23022 GBS_RS01090 WP_001867089.1 189781..190080(+) (comGE) [Streptococcus agalactiae NEM316]
MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG
MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG
Nucleotide
Download Length: 300 bp
>NTDB_id=23022 GBS_RS01090 WP_001867089.1 189781..190080(+) (comGE) [Streptococcus agalactiae NEM316]
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Streptococcus mutans UA140 |
38.542 |
96.97 |
0.374 |
| comGE | Streptococcus mutans UA159 |
38.542 |
96.97 |
0.374 |