Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB987_RS09180 Genome accession   NZ_CP021347
Coordinates   1885466..1886284 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain B8300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1880466..1891284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS18855 - 1881048..1881178 (-) 131 Protein_1759 hypothetical protein -
  AB987_RS09150 (AB987_1850) rpoZ 1881217..1881495 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB987_RS09155 (AB987_1851) gmk 1881568..1882197 (-) 630 WP_000015939.1 guanylate kinase -
  AB987_RS09160 (AB987_1852) ispH 1882320..1883270 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB987_RS09165 (AB987_1853) fimU 1883440..1883913 (+) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB987_RS09170 (AB987_1854) pilV 1883907..1884467 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  AB987_RS09175 (AB987_1855) pilW 1884468..1885469 (+) 1002 WP_000079193.1 PilW family protein Machinery gene
  AB987_RS09180 (AB987_1856) pilX 1885466..1886284 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB987_RS09185 (AB987_1857) pilY1 1886296..1890150 (+) 3855 WP_000768940.1 PilC/PilY family type IV pilus protein Machinery gene
  AB987_RS09190 (AB987_1858) pilY2 1890163..1890645 (+) 483 WP_001046418.1 type IV pilin protein Machinery gene
  AB987_RS09195 (AB987_1859) pilE 1890642..1891067 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=230108 AB987_RS09180 WP_000149374.1 1885466..1886284(+) (pilX) [Acinetobacter baumannii strain B8300]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=230108 AB987_RS09180 WP_000149374.1 1885466..1886284(+) (pilX) [Acinetobacter baumannii strain B8300]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment