Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB987_RS04255 Genome accession   NZ_CP021347
Coordinates   844936..845346 (-) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8300     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 839936..850346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB987_RS04225 (AB987_0846) - 840022..840291 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  AB987_RS04230 (AB987_0847) rapZ 840288..841139 (-) 852 WP_000821671.1 RNase adapter RapZ -
  AB987_RS04235 (AB987_0848) panC 841162..842010 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AB987_RS04240 (AB987_0849) panB 842014..842823 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AB987_RS04245 (AB987_0850) folK 842869..843351 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AB987_RS04250 (AB987_0851) pcnB 843348..844811 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AB987_RS04255 (AB987_0852) comEA 844936..845346 (-) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  AB987_RS04260 (AB987_0853) mazG 845315..846121 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  AB987_RS04265 (AB987_0854) - 846233..847006 (+) 774 WP_049590716.1 SDR family oxidoreductase -
  AB987_RS04270 (AB987_0855) - 847051..849357 (-) 2307 WP_002125975.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=230081 AB987_RS04255 WP_002125991.1 844936..845346(-) (comEA) [Acinetobacter baumannii strain B8300]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=230081 AB987_RS04255 WP_002125991.1 844936..845346(-) (comEA) [Acinetobacter baumannii strain B8300]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment